Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1560
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   138   2e-33
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    27   10.0 
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    27   10.0 
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF098506-1|ABN43085.1|  145|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  138 bits (334), Expect = 2e-33
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
 Frame = +3

Query: 9   ETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLV 188
           E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+LKAF KI   LV
Sbjct: 20  EKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALV 79

Query: 189 RELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVYDAILE 341
           RELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L+
Sbjct: 80  RELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLD 131


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 34  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 144
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 257 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDD 129
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 99  EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 272
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 255 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 312


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 99  EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 272
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 256 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 313


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 268 LWLGLGRILRSPTKTTCLPLNFF 200
           +W+G  R  R P K +C PL+ F
Sbjct: 143 VWVGAYRKARCPNKPSCTPLDTF 165


>AF098506-1|ABN43085.1|  145|Caenorhabditis elegans Hypothetical
           protein H29C22.1 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 21  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 140
           S+A ++LE N D+     E +  K  + E +NK+  + Y+
Sbjct: 33  SRAAIKLENNDDVPELFHENFEFKTCKEERYNKEQTVDYI 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,528
Number of Sequences: 27780
Number of extensions: 245143
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)