Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1560
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.33 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 12  TSISQALVELETNSDLKAQLRE 77
           T++S AL EL  N D++ +LRE
Sbjct: 311 TTMSNALYELALNQDVQKKLRE 332


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +3

Query: 105 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 284
           EL   KS +  +P+P  +    +      + +KK +G    F   +        + + + 
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611

Query: 285 KQKRPRSRTLTSVYDAIL 338
           K++R  ++TL  V    L
Sbjct: 612 KKERKATKTLAIVLGVFL 629


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 403 KRRPVNCNTTHYRANWVPGP 344
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 239 VSNKDYMFTTELLFELTD 186
           +SN   M  TELL ELT+
Sbjct: 2   LSNNSSMTQTELLQELTN 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,861
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)