Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1559
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 144 9e-36
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 94 9e-21
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 91 7e-20
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 90 2e-19
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 84 1e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 82 5e-17
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 64 2e-11
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 57 1e-09
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 50 3e-07
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 29 0.40
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 1.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.1
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 4.9
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 6.5
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 6.5
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 6.5
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 144 bits (348), Expect = 9e-36
Identities = 75/125 (60%), Positives = 89/125 (71%)
Frame = +1
Query: 40 VSLNPIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 219
+SLNP +I +E+ E AR+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 220 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXH 399
VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 400 PQTII 414
PQ II
Sbjct: 119 PQVII 123
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 94.3 bits (224), Expect = 9e-21
Identities = 50/111 (45%), Positives = 71/111 (63%)
Frame = +1
Query: 85 EKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVD 264
EK + R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V
Sbjct: 15 EKPQEVRLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVL 71
Query: 265 NPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTIIA 417
+PAAK+LVD+S QD E GDGTTSV + HP T+IA
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHP-TVIA 121
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 91.5 bits (217), Expect = 7e-20
Identities = 48/107 (44%), Positives = 66/107 (61%)
Frame = +1
Query: 94 EVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPA 273
E R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA
Sbjct: 20 EDVRNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPA 76
Query: 274 AKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTII 414
K+LV++++ QD+EVGDGTTSV + HP TII
Sbjct: 77 GKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTII 123
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 90.2 bits (214), Expect = 2e-19
Identities = 42/98 (42%), Positives = 66/98 (67%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 231
P+ +LK + + +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 232 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTV 345
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVV 103
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 83.8 bits (198), Expect = 1e-17
Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Frame = +1
Query: 49 NPIRILKNEAQEEKAEV--ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEV 222
NP +++++ ++ + A S + + ++V+++LGP+G+DKIL+S G++ V
Sbjct: 16 NPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILIS---PDGEITV 72
Query: 223 TNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTV 345
TNDGATIL + V++ AK+LV +SK QD+E+GDGTT V V
Sbjct: 73 TNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVV 113
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 81.8 bits (193), Expect = 5e-17
Identities = 42/122 (34%), Positives = 68/122 (55%)
Frame = +1
Query: 49 NPIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 228
+P+ ++ + A+MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 229 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQT 408
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 409 II 414
+I
Sbjct: 120 MI 121
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 63.7 bits (148), Expect = 2e-11
Identities = 35/119 (29%), Positives = 56/119 (47%)
Frame = +1
Query: 55 IRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDG 234
+ +L +A+ + A + AI + D++KS LGP G K+LV +G +++T DG
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDG 58
Query: 235 ATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTI 411
+L + + NP A + + QD+ GDGTTSV + HP I
Sbjct: 59 KVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLI 117
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 57.2 bits (132), Expect = 1e-09
Identities = 27/71 (38%), Positives = 48/71 (67%)
Frame = +1
Query: 133 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 312
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 313 EVGDGTTSVTV 345
E+GD V V
Sbjct: 95 ELGDAANFVVV 105
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 49.6 bits (113), Expect = 3e-07
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +1
Query: 100 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DN 267
AR S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 43 ARASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFEN 99
Query: 268 PAAKILVDMSKVQDEEVGDGTTSVTV 345
A+++ D++ +E GDGTT+ TV
Sbjct: 100 LGARLVQDVASKTNEVAGDGTTTATV 125
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 29.1 bits (62), Expect = 0.40
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 85 EKAEVARMSSFIGA-IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV 261
E+A+ +F G IA+ D+ S LG G+ RN G + DG T LKS+GV
Sbjct: 309 ERAKAGDKCAFTGILIAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGV 364
Query: 262 DNPAAKILVDMSKVQDEEVGD 324
+ K+ VQ ++ D
Sbjct: 365 RDLTYKLSFLACMVQPDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 82 EEKAEVARMSSFIGAIA--IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 255
+E A++SS + + +G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 738 QEATLEAKISSTLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 233 PSFVTST*PEF-LPQETKILSIPLGPKVLFTKSPMAIAPMKLDIRATSA 90
PS S P F LP K +P+G + F ++ +P ++ TSA
Sbjct: 362 PSIAGSQEPSFSLPLAPKWFKVPVGARFGFPNKIVSFSPNSKEVTITSA 410
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 257 PIDFNIVAPSFVTST*PEFLPQETKILSIP 168
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 204 VPPAGN*DLIHSFGT*STLYQISYGNSTD 118
V P + L+H +G T YQ YG + D
Sbjct: 308 VVPGTSVPLVHDYGASGTGYQAGYGMALD 336
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 112 WTSEQLQLSPLVLHF*G 62
WT QL LSP VL+F G
Sbjct: 311 WTQGQLWLSPRVLYFLG 327
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 37 MVSLNPIRILKNEAQEEKAEVARMSSF 117
+ SLN R L EEKA+V + SF
Sbjct: 73 LASLNKTRALNGTTAEEKAKVLQYCSF 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,062
Number of Sequences: 5004
Number of extensions: 33132
Number of successful extensions: 76
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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