Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1559
         (508 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   2.6  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   5.9  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +3

Query: 96  SCSDV--QFHRCYCHRRFGKE 152
           SCS    QF  CYC  +FG++
Sbjct: 401 SCSSFFQQFFHCYCPVKFGRK 421


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 25  PSSKMVSLNPIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGM 174
           PSS+    +  R +++  +  KA     SSF+ A+   D V+     +GM
Sbjct: 268 PSSQQGDSSSQRRVRHAGRRWKASQFSPSSFLEALFAADFVQRASTQEGM 317


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,353
Number of Sequences: 2352
Number of extensions: 8662
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)