Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1559
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical p... 164 3e-41
U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein. 164 3e-41
AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical ... 164 3e-41
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 98 4e-21
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 98 4e-21
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 95 2e-20
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 95 2e-20
AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical... 87 9e-18
AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical... 87 9e-18
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 80 8e-16
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 80 8e-16
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 80 8e-16
AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical ... 77 1e-14
U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin cont... 65 2e-11
U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin cont... 65 2e-11
AC024827-1|AAF60806.2| 581|Caenorhabditis elegans Hypothetical ... 61 5e-10
L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein. 57 8e-09
AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock pr... 57 8e-09
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 29 1.5
Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical pr... 27 5.9
>Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 164 bits (399), Expect = 3e-41
Identities = 86/136 (63%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNS-GQVEVTN 228
P++ILK+ AQEE+ E AR+SSF+GAIAIGDLVKSTLGPKGMDKIL+S S G ++VTN
Sbjct: 3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTN 62
Query: 229 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQT 408
DGATILKSIGVDNPAAK+LVDMS QD EVGDGTTSVTV HPQT
Sbjct: 63 DGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQT 122
Query: 409 IIAWLENCF*CSQTSL 456
II+ +Q SL
Sbjct: 123 IISGYRRALGIAQESL 138
>U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein.
Length = 529
Score = 164 bits (399), Expect = 3e-41
Identities = 86/136 (63%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNS-GQVEVTN 228
P++ILK+ AQEE+ E AR+SSF+GAIAIGDLVKSTLGPKGMDKIL+S S G ++VTN
Sbjct: 3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTN 62
Query: 229 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQT 408
DGATILKSIGVDNPAAK+LVDMS QD EVGDGTTSVTV HPQT
Sbjct: 63 DGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQT 122
Query: 409 IIAWLENCF*CSQTSL 456
II+ +Q SL
Sbjct: 123 IISGYRRALGIAQESL 138
>AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 164 bits (399), Expect = 3e-41
Identities = 86/136 (63%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNS-GQVEVTN 228
P++ILK+ AQEE+ E AR+SSF+GAIAIGDLVKSTLGPKGMDKIL+S S G ++VTN
Sbjct: 3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTN 62
Query: 229 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQT 408
DGATILKSIGVDNPAAK+LVDMS QD EVGDGTTSVTV HPQT
Sbjct: 63 DGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQT 122
Query: 409 IIAWLENCF*CSQTSL 456
II+ +Q SL
Sbjct: 123 IISGYRRALGIAQESL 138
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 97.9 bits (233), Expect = 4e-21
Identities = 50/104 (48%), Positives = 68/104 (65%)
Frame = +1
Query: 103 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 282
R + A+AI ++VKS+LGP G+DK+LV + G V VTNDGATILK + V++PA K+
Sbjct: 22 RSQNVTAAVAIANIVKSSLGPVGLDKMLVD---DVGDVIVTNDGATILKQLEVEHPAGKV 78
Query: 283 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTII 414
LV+++++QDEEVGDGTTSV + HP TII
Sbjct: 79 LVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTII 122
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 97.9 bits (233), Expect = 4e-21
Identities = 50/104 (48%), Positives = 68/104 (65%)
Frame = +1
Query: 103 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 282
R + A+AI ++VKS+LGP G+DK+LV + G V VTNDGATILK + V++PA K+
Sbjct: 22 RSQNVTAAVAIANIVKSSLGPVGLDKMLVD---DVGDVIVTNDGATILKQLEVEHPAGKV 78
Query: 283 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTII 414
LV+++++QDEEVGDGTTSV + HP TII
Sbjct: 79 LVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTII 122
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 95.5 bits (227), Expect = 2e-20
Identities = 49/115 (42%), Positives = 69/115 (60%)
Frame = +1
Query: 67 KNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATIL 246
+N ++K E R S+ + A A+ D V+++LGP+GMDK++ S +G V +TNDGATIL
Sbjct: 21 RNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQS---GNGDVTITNDGATIL 77
Query: 247 KSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTI 411
+ V +P AK+LV++SK QD E GDGTT+V V HP TI
Sbjct: 78 NQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTI 132
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 95.5 bits (227), Expect = 2e-20
Identities = 49/115 (42%), Positives = 69/115 (60%)
Frame = +1
Query: 67 KNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATIL 246
+N ++K E R S+ + A A+ D V+++LGP+GMDK++ S +G V +TNDGATIL
Sbjct: 21 RNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQS---GNGDVTITNDGATIL 77
Query: 247 KSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTI 411
+ V +P AK+LV++SK QD E GDGTT+V V HP TI
Sbjct: 78 NQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTI 132
>AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical
protein T10B5.5b protein.
Length = 455
Score = 86.6 bits (205), Expect = 9e-18
Identities = 44/121 (36%), Positives = 70/121 (57%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 231
PI +LK+ + ++ + +S+ + D +++TLGP+G+DK++V + G ++ND
Sbjct: 5 PIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIVD---SKGATTISND 61
Query: 232 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTI 411
GATILK + + PAA +VD+++ QD EVGDGTTSV V HPQ +
Sbjct: 62 GATILKLLDIVFPAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIEDGVHPQLL 121
Query: 412 I 414
I
Sbjct: 122 I 122
>AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical
protein T10B5.5a protein.
Length = 535
Score = 86.6 bits (205), Expect = 9e-18
Identities = 44/121 (36%), Positives = 70/121 (57%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 231
PI +LK+ + ++ + +S+ + D +++TLGP+G+DK++V + G ++ND
Sbjct: 5 PIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIVD---SKGATTISND 61
Query: 232 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTI 411
GATILK + + PAA +VD+++ QD EVGDGTTSV V HPQ +
Sbjct: 62 GATILKLLDIVFPAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIEDGVHPQLL 121
Query: 412 I 414
I
Sbjct: 122 I 122
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 80.2 bits (189), Expect = 8e-16
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = +1
Query: 109 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 288
S + A A+ + ++++LGP+G+DK+LVS G V +TNDGATI++ + V + AK++V
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVS---PDGDVTITNDGATIMEKMDVQHHVAKLMV 93
Query: 289 DMSKVQDEEVGDGTTSVTV 345
++SK QD E+GDGTT V V
Sbjct: 94 ELSKSQDHEIGDGTTGVVV 112
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 80.2 bits (189), Expect = 8e-16
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = +1
Query: 109 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 288
S + A A+ + ++++LGP+G+DK+LVS G V +TNDGATI++ + V + AK++V
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVS---PDGDVTITNDGATIMEKMDVQHHVAKLMV 93
Query: 289 DMSKVQDEEVGDGTTSVTV 345
++SK QD E+GDGTT V V
Sbjct: 94 ELSKSQDHEIGDGTTGVVV 112
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 80.2 bits (189), Expect = 8e-16
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = +1
Query: 109 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 288
S + A A+ + ++++LGP+G+DK+LVS G V +TNDGATI++ + V + AK++V
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVS---PDGDVTITNDGATIMEKMDVQHHVAKLMV 93
Query: 289 DMSKVQDEEVGDGTTSVTV 345
++SK QD E+GDGTT V V
Sbjct: 94 ELSKSQDHEIGDGTTGVVV 112
>AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical
protein F54A3.3 protein.
Length = 543
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/121 (33%), Positives = 64/121 (52%)
Frame = +1
Query: 52 PIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 231
PI +L + E ++ + I D+++++LGP+ M K+L+ G + +TND
Sbjct: 8 PIIVLSQGTKRESGHQVQIGNINACKTIADVIRTSLGPRAMLKMLMD---PMGGIVMTND 64
Query: 232 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQTI 411
G IL+ I V +PAAK ++++++ QDEE GDGTTSV + HP I
Sbjct: 65 GNAILREITVKHPAAKSMIEIARTQDEETGDGTTSVIILAGEVMAHAQTYLEQKTHPTLI 124
Query: 412 I 414
I
Sbjct: 125 I 125
>U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform b protein.
Length = 429
Score = 65.3 bits (152), Expect = 2e-11
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +1
Query: 46 LNPIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVT 225
++ I+ L +A+ + A + GA + D+++S LGPKG K+LVS +G +++T
Sbjct: 1 MSSIQCLNPKAELARHAAALELNISGARGLQDVMRSNLGPKGTLKMLVS---GAGDIKLT 57
Query: 226 NDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQ 405
DG +L + + +P A ++ S QD+ GDGTTS + HP+
Sbjct: 58 KDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGLHPR 117
Query: 406 TIIAWLE 426
+ E
Sbjct: 118 IVTEGFE 124
>U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform a protein.
Length = 539
Score = 65.3 bits (152), Expect = 2e-11
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +1
Query: 46 LNPIRILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVT 225
++ I+ L +A+ + A + GA + D+++S LGPKG K+LVS +G +++T
Sbjct: 1 MSSIQCLNPKAELARHAAALELNISGARGLQDVMRSNLGPKGTLKMLVS---GAGDIKLT 57
Query: 226 NDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXXXXXXXXHPQ 405
DG +L + + +P A ++ S QD+ GDGTTS + HP+
Sbjct: 58 KDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGLHPR 117
Query: 406 TIIAWLE 426
+ E
Sbjct: 118 IVTEGFE 124
>AC024827-1|AAF60806.2| 581|Caenorhabditis elegans Hypothetical
protein Y55F3AR.3 protein.
Length = 581
Score = 60.9 bits (141), Expect = 5e-10
Identities = 31/97 (31%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +1
Query: 58 RILKNEAQEEKAEVARMSSFIGAIA-IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDG 234
R +K AQ K + I A + ++S GP GM+K++++ + ++ VTND
Sbjct: 12 RFMKEGAQHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVIN---HIEKLFVTNDA 68
Query: 235 ATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTV 345
ATILK + + +PAA+I++ +++Q++++GD T +V +
Sbjct: 69 ATILKELEIQHPAARIIIMATEMQEKQIGDNTNTVVI 105
>L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein.
Length = 568
Score = 56.8 bits (131), Expect = 8e-09
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Frame = +1
Query: 61 ILKNEAQEEK-AEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 237
++++ A++ K R + +G + D V T+GPKG + I+ ++ G ++T DG
Sbjct: 13 VVRSYAKDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNVIIE---QSWGSPKITKDGV 69
Query: 238 TILKSIGV----DNPAAKILVDMSKVQDEEVGDGTTSVTV 345
T+ KSI + N AK++ D++ +EE GDGTT TV
Sbjct: 70 TVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATV 109
>AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock
protein protein 60 protein.
Length = 568
Score = 56.8 bits (131), Expect = 8e-09
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Frame = +1
Query: 61 ILKNEAQEEK-AEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 237
++++ A++ K R + +G + D V T+GPKG + I+ ++ G ++T DG
Sbjct: 13 VVRSYAKDVKFGAEGRQAMLVGVNLLADAVSVTMGPKGRNVIIE---QSWGSPKITKDGV 69
Query: 238 TILKSIGV----DNPAAKILVDMSKVQDEEVGDGTTSVTV 345
T+ KSI + N AK++ D++ +EE GDGTT TV
Sbjct: 70 TVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATV 109
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 61 ILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 240
+LKN+ Q + ++ S +G +A GD V T P+G + I Q +V +D
Sbjct: 1265 LLKNKGQASNSSISPSSLILGQLAFGD-VDQTPRPRGDNPI-------EFQYDVVDDDDP 1316
Query: 241 ILKSIGVDNPAAKILVDMSKVQDEE 315
I + P + L +D+E
Sbjct: 1317 IFEEKNCSAPVFEFLKSNDDEEDDE 1341
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 61 ILKNEAQEEKAEVARMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 240
+LKN+ Q + ++ S +G +A GD V T P+G + I Q +V +D
Sbjct: 1265 LLKNKGQASNSSISPSSLILGQLAFGD-VDQTPRPRGDNPI-------EFQYDVVDDDDP 1316
Query: 241 ILKSIGVDNPAAKILVDMSKVQDEE 315
I + P + L +D+E
Sbjct: 1317 IFEEKNCSAPVFEFLKSNDDEEDDE 1341
>Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical
protein ZK863.5 protein.
Length = 347
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -2
Query: 231 IICYFDL---TRVPPAGN*DLIHSFGT*STLYQIS--YGNSTDETGHPSNFSFLLLCFIF 67
+ C+FD+ +R+ P+G I S G L + S G S H +F L+LCFIF
Sbjct: 52 LACFFDIFSQSRLIPSGTTLGIASTGLCKYLSEWSCFLGFSLQLHFHSYSFHLLILCFIF 111
Query: 66 K 64
+
Sbjct: 112 R 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,326
Number of Sequences: 27780
Number of extensions: 179953
Number of successful extensions: 359
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -