Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1557
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    50   6e-05
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    41   0.029
UniRef50_Q8IKQ6 Cluster: Putative uncharacterized protein; n=2; ...    33   4.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
 Frame = +2

Query: 413 RYRER*KTRTKHTDFLSGS----RFRSGGRFCEARLLLGLVLATSSNFEPREL 559
           R R     +T+   FL+GS    RFRS GRFCEA LLLGLVLA S    P EL
Sbjct: 63  RVRRATNPKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 40.7 bits (91), Expect = 0.029
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = +3

Query: 99   YLRFLSSQRWRTAKKKHTCVCSVARHYIPDPASRMESSRRRPKHVISDPPNPLTVLL 269
            +++ +S + +  A +    +   A  Y P+P     S RRRP+HV++DP +P+T+ L
Sbjct: 875  HMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLAL 931


>UniRef50_Q8IKQ6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 3018

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +1

Query: 28   YHNDAY-VNINL*CDKFKYYTLRHSIYDFSARKDGERP-RRNIHVF 159
            Y+ND Y ++INL    +K +T+   +Y+F   KD  R  ++N+H+F
Sbjct: 2380 YNNDMYNIDINLKSFNYKNFTMNKIMYEFLYNKDIIRIFKKNVHMF 2425


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,594,167
Number of Sequences: 1657284
Number of extensions: 11355605
Number of successful extensions: 27051
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27038
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)