Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1557
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   1.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.3  
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    25   7.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.3  

>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +2

Query: 89  YDILSTISQLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTN 259
           Y+      +  +  N  E +Y   F    LHS S  P  +    P    + SS +TN
Sbjct: 93  YEYTERTDRYMEQQNAHESSYNSRFIPPVLHSTSSLPASQGGGMPSPAIYSSSMATN 149


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 170 ASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNPSVAS 319
           +S  S S  P    ST   +    SS S+  + + +   SSFSS+P+ +S
Sbjct: 291 SSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 225 KHVISDPPNPLTVL 266
           +H++ +PP PLTVL
Sbjct: 499 RHILDNPPKPLTVL 512


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 HVFVQSRVTTFPIPRAEWKAVDVAQNTSF 237
           H +V +R  TFP+   EW+ VDV     F
Sbjct: 23  HGYVGNRSATFPLQLHEWE-VDVVPTVHF 50


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 313 CVTLSHFFMQLEQRP*RQT*VNNPIQYKYELTFTLSRTLKNSH*AH*FSQWIAF 474
           CV LS ++  LE +  + + + +  +Y + L       + + H  H FS+ +AF
Sbjct: 379 CVVLSIYWPYLEDKLLKFSDLGDIFEYFFSLIHDCDYAIWSVHDEHQFSELLAF 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,008
Number of Sequences: 5004
Number of extensions: 48080
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)