Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1557
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0073 + 19817084-19817388,19817777-19818023                       29   4.1  
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171...    29   4.1  
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    29   4.1  
06_03_0188 - 17691582-17692241                                         29   4.1  
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    28   5.5  
10_08_0047 + 14430437-14430463,14430615-14430714,14431076-144311...    28   5.5  
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314...    28   5.5  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           27   9.6  

>11_06_0073 + 19817084-19817388,19817777-19818023
          Length = 183

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 262 CFYVPQAQVIVLVEPVGCVTLSHFF 336
           C+ VPQA + V + PV C   S +F
Sbjct: 120 CYKVPQADMAVQLSPVACAVCSAWF 144


>10_01_0145 -
           1708597-1708824,1710225-1710468,1711217-1711263,
           1711767-1711857,1712982-1713094,1713387-1713462,
           1713501-1713560,1713759-1713835,1714105-1714672,
           1715332-1715509,1715632-1715774,1717255-1717424,
           1717588-1717822,1718565-1718779
          Length = 814

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 74  LNITLYD-ILSTISQLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQ 250
           L   +YD  L+ + +  K   GQ E+ +    R+    R  E +G  +T P   H G S 
Sbjct: 193 LTFPVYDKYLTGLDRAIKKMKGQSESSLLSAQRSQRGERIVEVDGTLTTQPVLEHVGIS- 251

Query: 251 STNGAFTCLKHRSSFSS 301
           +  G  T   H   F +
Sbjct: 252 TWPGRLTLTDHALYFEA 268


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +2

Query: 170 ASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNPSVA 316
           +S  S  R   G  S  P TR  G   S     T   HR   + NP ++
Sbjct: 239 SSARSGGRGGGGDDSALPSTRSGGKGDSGGSVATASPHRLQMAGNPRLS 287


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 136 PRRNIHVFVQSRVTTFPIPRAEW 204
           PRR  H   Q R TT+P+P + W
Sbjct: 4   PRRPCHGQRQQRYTTYPLPASPW 26


>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 406 TFTLSRTLKNSH*AH*FSQWIAFPIR 483
           +FTL R L N   AH   +WI F +R
Sbjct: 219 SFTLKRNLNNHKYAHYIDRWIYFAVR 244


>10_08_0047 +
           14430437-14430463,14430615-14430714,14431076-14431153,
           14431340-14431427,14431536-14431640,14431998-14432540,
           14433023-14433157,14433256-14433364,14433578-14433726,
           14433800-14434046
          Length = 526

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  HSIYDFSARKDGERPRRNIHVFVQSRVTTFPIPRAEWK 207
           HS +  S +KDG+  RRN  V    R T FP+   +++
Sbjct: 312 HSSHLTSGQKDGDEHRRNSDVMEILRKTRFPMVYGQYE 349


>03_06_0233 +
           32530174-32530492,32531081-32531127,32531277-32531413,
           32531673-32531841,32532598-32532885,32533021-32533107,
           32533454-32534152,32534244-32534735
          Length = 745

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 179 HSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNPSVASL 322
           HS   E NG  S+  K R  GSS+  + +F  L ++   S N +++S+
Sbjct: 519 HSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSV 566


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 251 IGRIRNDVFWATSTAFH 201
           +G IRN +FW+TS+  H
Sbjct: 29  VGAIRNHLFWSTSSPLH 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,179,351
Number of Sequences: 37544
Number of extensions: 326553
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)