Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1557
(642 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118334-1|AAM48363.1| 665|Drosophila melanogaster LD24677p pro... 30 2.3
AE013599-2349|AAM70890.1| 665|Drosophila melanogaster CG5522-PF... 30 2.3
AE013599-2348|AAF57951.1| 665|Drosophila melanogaster CG5522-PD... 30 2.3
AE013599-2347|AAM70889.1| 665|Drosophila melanogaster CG5522-PC... 30 2.3
AE013599-2346|AAM70888.1| 702|Drosophila melanogaster CG5522-PE... 30 2.3
AE013599-2345|AAF57952.1| 702|Drosophila melanogaster CG5522-PB... 30 2.3
AE013599-2344|AAM70887.1| 702|Drosophila melanogaster CG5522-PA... 30 2.3
AY069584-1|AAL39729.1| 195|Drosophila melanogaster LD32469p pro... 29 5.4
AF232775-1|AAF43415.1| 195|Drosophila melanogaster SR family sp... 29 5.4
AE014134-2204|AAS64684.1| 112|Drosophila melanogaster CG5442-PA... 29 5.4
AE014134-2203|AAF53192.1| 195|Drosophila melanogaster CG5442-PB... 29 5.4
BT025846-1|ABF85746.1| 1325|Drosophila melanogaster IP14385p pro... 28 9.4
AE014297-3323|AAF56132.3| 1348|Drosophila melanogaster CG4393-PA... 28 9.4
>AY118334-1|AAM48363.1| 665|Drosophila melanogaster LD24677p
protein.
Length = 665
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AE013599-2349|AAM70890.1| 665|Drosophila melanogaster CG5522-PF,
isoform F protein.
Length = 665
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AE013599-2348|AAF57951.1| 665|Drosophila melanogaster CG5522-PD,
isoform D protein.
Length = 665
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AE013599-2347|AAM70889.1| 665|Drosophila melanogaster CG5522-PC,
isoform C protein.
Length = 665
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AE013599-2346|AAM70888.1| 702|Drosophila melanogaster CG5522-PE,
isoform E protein.
Length = 702
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AE013599-2345|AAF57952.1| 702|Drosophila melanogaster CG5522-PB,
isoform B protein.
Length = 702
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AE013599-2344|AAM70887.1| 702|Drosophila melanogaster CG5522-PA,
isoform A protein.
Length = 702
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 113 QLAKMANGQEETYMCLFSRASLHSRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSS 292
Q + NG T CL + + EP Q + KT + S++ N + CL +S
Sbjct: 64 QRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQASKTLNIKSTRRKN-SIGCL---NS 119
Query: 293 FSSNP 307
FSS+P
Sbjct: 120 FSSSP 124
>AY069584-1|AAL39729.1| 195|Drosophila melanogaster LD32469p
protein.
Length = 195
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 182 SRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNP 307
SRSR P ++S SP+ R + S+S G+ + + RS FS +P
Sbjct: 129 SRSRSPMRRRSRSPRRRSYSRSRSP-GSHS-PERRSKFSRSP 168
>AF232775-1|AAF43415.1| 195|Drosophila melanogaster SR family
splicing factor SC35 protein.
Length = 195
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 182 SRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNP 307
SRSR P ++S SP+ R + S+S G+ + + RS FS +P
Sbjct: 129 SRSRSPMRRRSRSPRRRSYSRSRSP-GSHS-PERRSKFSRSP 168
>AE014134-2204|AAS64684.1| 112|Drosophila melanogaster CG5442-PA,
isoform A protein.
Length = 112
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 182 SRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNP 307
SRSR P ++S SP+ R + S+S G+ + + RS FS +P
Sbjct: 46 SRSRSPMRRRSRSPRRRSYSRSRSP-GSHS-PERRSKFSRSP 85
>AE014134-2203|AAF53192.1| 195|Drosophila melanogaster CG5442-PB,
isoform B protein.
Length = 195
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 182 SRSREPNGKQSTSPKTRHFGSSQSTNGAFTCLKHRSSFSSNP 307
SRSR P ++S SP+ R + S+S G+ + + RS FS +P
Sbjct: 129 SRSRSPMRRRSRSPRRRSYSRSRSP-GSHS-PERRSKFSRSP 168
>BT025846-1|ABF85746.1| 1325|Drosophila melanogaster IP14385p
protein.
Length = 1325
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 546 SPVSSPTKF-RRNLGITPRGGGPGTQF 623
+P P K RRNL ++P GPG QF
Sbjct: 443 APAGPPKKPPRRNLSVSPTHAGPGQQF 469
>AE014297-3323|AAF56132.3| 1348|Drosophila melanogaster CG4393-PA
protein.
Length = 1348
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 546 SPVSSPTKF-RRNLGITPRGGGPGTQF 623
+P P K RRNL ++P GPG QF
Sbjct: 443 APAGPPKKPPRRNLSVSPTHAGPGQQF 469
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,811,755
Number of Sequences: 53049
Number of extensions: 551468
Number of successful extensions: 1519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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