Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1555
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 157 8e-40
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 153 2e-38
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 145 5e-36
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 141 6e-35
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 137 1e-33
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.88
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 6.2
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 6.2
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.2
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 8.2
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.2
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 8.2
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 157 bits (382), Expect = 8e-40
Identities = 69/178 (38%), Positives = 118/178 (66%), Gaps = 3/178 (1%)
Frame = +2
Query: 2 SGKTESTNFLLHHLTALSQKGSHG---SGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGK 172
+GKT + +++ +LT++ +G VE +L+ P++EAFGNAKT N+NSSRFGK
Sbjct: 163 AGKTVAAKYIMRYLTSVQGVDHNGVVKRSVENQVLATNPIMEAFGNAKTIRNDNSSRFGK 222
Query: 173 FIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQEREQLHLLSV 352
++ +++ EN ++ GA V YLLE+SR+ S + ERNYH+FY L+ G +E++R++ L S
Sbjct: 223 YVTISFDENLLITGANVNTYLLERSRVVSLLKGERNYHIFYQLITGCTEEQRDKWFLESA 282
Query: 353 DKYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDKQRRLFAVLSAVLLLGNVRV 526
+NYLS+ C ++ G D+ +F+ +++ +G + +Q +F +L+A+L LGN+ V
Sbjct: 283 SSFNYLSQGNCDEISGVDDSNDFTITCRALSTIGISESRQEDVFCLLAALLHLGNIEV 340
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 153 bits (371), Expect = 2e-38
Identities = 79/179 (44%), Positives = 114/179 (63%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 SGKTESTNFLLHHLTALSQKGSHGSG-VEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 178
+GKTE+T ++ +LT+++ + S +E+ IL PVLEAFGNA+T NNNSSRFGKFI
Sbjct: 186 AGKTETTKKVIQYLTSVTDASTSDSQQLEKKILETNPVLEAFGNAQTVRNNNSSRFGKFI 245
Query: 179 QVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQEREQLHL-LSVD 355
++ + NG + GA + YLLEKSR+ NERNYHVFY LL GA E L L VD
Sbjct: 246 RIEFSNNGSIVGANLDWYLLEKSRVIHPSSNERNYHVFYQLLRGADGSLLESLFLDRYVD 305
Query: 356 KYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDKQRRLFAVLSAVLLLGNVRVST 532
Y+YL K G + G D+ EF +L + +GF ++ LF +++++L +GN+ V++
Sbjct: 306 HYSYL-KNGLKHINGVDDGKEFQKLCFGLRTLGFDNNEIHSLFLIIASILHIGNIEVAS 363
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 145 bits (351), Expect = 5e-36
Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Frame = +2
Query: 2 SGKTESTNFLLHHLTALSQKGSHGSG-VEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 178
+GKTE+T ++ +L A++ + GS VE+ I+ PVLE+FGNA+T NNNSSRFGKFI
Sbjct: 174 AGKTENTKRIIQYLAAIASSTTVGSSQVEEQIIKTNPVLESFGNARTVRNNNSSRFGKFI 233
Query: 179 QVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQEREQLHLL-SVD 355
+V + +G + A ++ YLLEKSR+ Q ERNYHVFY LL+GA + +L L + +
Sbjct: 234 KVEFSLSGEISNAAIEWYLLEKSRVVHQNEFERNYHVFYQLLSGADTALKNKLLLTDNCN 293
Query: 356 KYNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDKQRRLFAVLSAVLLLGNVRV 526
Y YL K + G D++ EF L + + +GF + LF +LS +L +GN+ V
Sbjct: 294 DYRYL-KDSVHIIDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMGNIDV 349
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 141 bits (342), Expect = 6e-35
Identities = 64/152 (42%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Frame = +2
Query: 74 SGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRI 253
+ VE IL+ P++EAFGN+KT+ N+NSSRFGK+IQ+ + N + GA +Q YLLE+SR+
Sbjct: 205 TAVENEILATNPIMEAFGNSKTSRNDNSSRFGKYIQILFDGNATIIGAKIQTYLLERSRL 264
Query: 254 CSQGRNERNYHVFYYLLAGASEQEREQLHLL-SVDKYNYLSKTGCSDVPGTDEQYEFSRL 430
Q ERNYH+FY +LAG+S ++ E+ L+ + ++NYL + CS + G +++ EF
Sbjct: 265 VFQPNQERNYHIFYQILAGSSSEQLEKWKLVENSQEFNYLKQGNCSTIEGVNDKEEFKAT 324
Query: 431 KQSMEMVGFTMDKQRRLFAVLSAVLLLGNVRV 526
+++ VG D +F++L+A+L +GN+ V
Sbjct: 325 VDALKTVGIDNDTCECIFSLLAALLHIGNIEV 356
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 137 bits (331), Expect = 1e-33
Identities = 65/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Frame = +2
Query: 2 SGKTESTNFLLHHLTALSQK-GSHGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 178
+GKTE+ ++ ++T +S+ G+ V + IL+ P+LE+FG AKT NNNSSR GK++
Sbjct: 137 AGKTEAAKRIMQYITHVSKSVGTEIERVSEIILATNPLLESFGCAKTLRNNNSSRHGKYL 196
Query: 179 QVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQEREQLHLLSVDK 358
++ + G+ GA + YLLEK+RI +Q RNERN+H+FY A ++ R+ + +
Sbjct: 197 EMIFNSGGVPVGAKITNYLLEKNRIVNQVRNERNFHIFYQFTKSAPQKYRDTYGIQGPEN 256
Query: 359 YNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTMDKQRRLFAVLSAVLLLGNVR 523
Y Y S C V G ++ +F +M+++G T +Q +F +LS +L LGN++
Sbjct: 257 YVYTSACQCLSVDGISDEKDFQGTMNAMKVIGITEPEQDEIFRMLSIILWLGNIQ 311
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 0.88
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 228 NTYWKSREYAAKVATRGIITYFITYW 305
N SREY A+VA I+ ITYW
Sbjct: 98 NCILDSREYRAQVADAQILNLAITYW 123
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 234 YWKSREYAAKVATRGIITYFITYWRVLRNRRENSYIYSVWT 356
YW +A+ + Y YW L+NR + +Y ++T
Sbjct: 117 YWTRFTTSARFINH-LFGYLNRYWVKLKNRFTETLVYDIYT 156
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 353 DKYNYLSKTGCSDVPGTDEQYEFSRLKQSM 442
D NYL+ TG + DE + F+R +Q +
Sbjct: 167 DSQNYLTLTGRKTIIFLDEVHRFNRAQQDI 196
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 44 TALSQKGSHGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 178
T +K +HGS + T S L++FG + + SS F + +
Sbjct: 38 TVSGRKSNHGSSLTDTGESDQLSLKSFGAIRQPSQHRSSLFSRML 82
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 359 YNYLSKTGCSDVPGTDEQYEFSRLKQSMEMVGFTM 463
+N S S+ P +D++ +FSRL + FT+
Sbjct: 257 FNLFSLRSSSNNPDSDQESQFSRLPDERATMFFTI 291
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.2
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 149 NNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQER 328
N++S GK +N+ M+HG + Y + ++ + E V YLL A +
Sbjct: 43 NSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQYA--EFN 100
Query: 329 EQLHLLSVD 355
L LLSV+
Sbjct: 101 PDLALLSVN 109
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 442 GDGGLHHGQTTEVICCSLSSSVIR 513
G+ GL G T +IC SSS IR
Sbjct: 541 GEEGLDIGDTDMIICYDASSSPIR 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,307
Number of Sequences: 5004
Number of extensions: 50950
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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