Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1554
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   120   1e-28
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   117   1e-27
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.032
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   0.92 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   4.9  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   4.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  120 bits (290), Expect = 1e-28
 Identities = 58/93 (62%), Positives = 69/93 (74%)
 Frame = -1

Query: 592 DPAQVHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARKVLRL 413
           DP    Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAR+VLR+
Sbjct: 128 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRV 187

Query: 412 RGVLPRDQRWDVVVDLFFSRDPEESEKDEQQAK 314
           RG L R   WDV+ DL+F RDPEE E++E+  K
Sbjct: 188 RGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  117 bits (282), Expect = 1e-27
 Identities = 56/91 (61%), Positives = 68/91 (74%)
 Frame = -1

Query: 592 DPAQVHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARKVLRL 413
           DP    Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAR+VLRL
Sbjct: 129 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRL 188

Query: 412 RGVLPRDQRWDVVVDLFFSRDPEESEKDEQQ 320
           RG + R   W+V+ DL+F RDPEE E++E+Q
Sbjct: 189 RGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 33.1 bits (72), Expect = 0.032
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 595 LDPAQVHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 428
           L+P +      EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 186 LNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 565 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 455
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 212 PTCCTRCSSCFWSTP 168
           PTCC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 357 EKNKSTTTSQRWSRGSTPRSL-NTLRANN 440
           E+  S+    RW   STP SL N++  NN
Sbjct: 305 EQEVSSMMGNRWQHSSTPASLFNSVERNN 333


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 591 TLHKSINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTLLV 451
           +L+K + PLL   +  F  LL + +TP   DL+T L    P   +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,565
Number of Sequences: 5004
Number of extensions: 44398
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)