Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1554
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 122 3e-28
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 119 2e-27
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 30 1.6
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.2
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 29 2.9
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 5.0
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 28 6.6
06_03_1140 - 27942927-27942986,27943134-27943328 27 8.7
05_06_0170 - 26124178-26124670,26124699-26124703 27 8.7
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 8.7
04_03_0663 - 18487295-18487795 27 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 122 bits (293), Expect = 3e-28
Identities = 53/95 (55%), Positives = 71/95 (74%)
Frame = -1
Query: 592 DPAQVHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARKVLRL 413
DP HQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQM 189
Query: 412 RGVLPRDQRWDVVVDLFFSRDPEESEKDEQQAKEQ 308
RG + +WDV+VDLFF RDPEE+++ E++A Q
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 119 bits (286), Expect = 2e-27
Identities = 51/91 (56%), Positives = 68/91 (74%)
Frame = -1
Query: 592 DPAQVHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARKVLRL 413
DP HQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM 189
Query: 412 RGVLPRDQRWDVVVDLFFSRDPEESEKDEQQ 320
RG + +WDV+VDLFF RDPEE+++ E++
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 441 GCWHVKC*GFVVCFPVTSAGMLWLICSSPVTLKKV 337
GC ++ C GFV+ TS GM+ S P+ + KV
Sbjct: 359 GCMNMLCPGFVLLSRTTSPGMVLTTGSIPLNMTKV 393
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 200 TRCSSCFWSTPCSRRMVCPGTR*VEHN 120
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 200 TRCSSCFWSTPCSRRMVCPGTR 135
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 350 VTGEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 466
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 200 TRCSSCFWSTPCSRRMVCPGTR*VEHN 120
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 420 NTLRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAI 536
N L+ANN H +EW+ + +H + N E+ L K I
Sbjct: 481 NELKANNGHSMALEWKRVTIH-MYSQRNKRPEAPLAKVI 518
>06_03_1140 - 27942927-27942986,27943134-27943328
Length = 84
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 502 FVDIAIPCNTKSSHSIGLMWWLLARKVLRLRGVLPRDQRWDVV 374
FV + + + + H IG W L K+L + + + + WDVV
Sbjct: 20 FVCLTVGVTSSALHGIGRHWDTLRCKILGILKCIVKYKFWDVV 62
>05_06_0170 - 26124178-26124670,26124699-26124703
Length = 165
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -1
Query: 469 SSHSIGLMWWLLARKVLRL---RGVLPRDQRWDVVVDLFFSRDPEESEKDEQQA 317
SS G + L+ KV RL RG+ R Q +V + S +PEE+ Q++
Sbjct: 21 SSFEKGPFYALIRSKVKRLIASRGIKKRQQSSPTMVSMSESPEPEEASAQHQES 74
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 434 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 532
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>04_03_0663 - 18487295-18487795
Length = 166
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 130 THLVPGQTILLEQGVLQKQELQRVQQVG 213
T + P QT + +Q QKQ QR+Q++G
Sbjct: 63 TQIKPNQTKIKQQEENQKQSSQRIQKLG 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,560
Number of Sequences: 37544
Number of extensions: 305340
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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