Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1553
(596 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 42 0.015
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ... 37 0.31
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 37 0.41
UniRef50_A2FHQ1 Cluster: TPR Domain containing protein; n=1; Tri... 36 0.72
UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse tr... 35 1.3
UniRef50_Q5ZBP1 Cluster: Putative uncharacterized protein P0704D... 34 2.2
UniRef50_O75154 Cluster: Rab11 family-interacting protein 3; n=9... 33 3.9
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ... 33 5.1
UniRef50_Q4PC19 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 33 6.7
UniRef50_Q3ABG3 Cluster: Conserved domain protein; n=1; Carboxyd... 33 6.7
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 41.5 bits (93), Expect = 0.015
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 75 QVDGIRSRGRSPTR*SDLVKTLTSLPITEAIKTAEDRKTWRRILHRVVHI 224
QV+G R RGR + D +K T L TEA + A+DR WR+ R +
Sbjct: 354 QVEGKRKRGRQRKQWFDNIKEWTGLTYTEAKRLAQDRNNWRKTTRRCADV 403
>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 275
Score = 37.1 bits (82), Expect = 0.31
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 521 RGGARYPIRPIVSRIT 568
RGGARYPIRPIVSRIT
Sbjct: 260 RGGARYPIRPIVSRIT 275
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 36.7 bits (81), Expect = 0.41
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 54 PCLFAVGQVDGIRSRGRSPTR*SDLVKT---LTSLP-ITEAIKTAEDRKTWRRI 203
P + G+V G R RGR P R D + S+P +T+A + A DRKTW I
Sbjct: 962 PKIAVEGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTWHTI 1015
>UniRef50_A2FHQ1 Cluster: TPR Domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: TPR Domain containing
protein - Trichomonas vaginalis G3
Length = 1026
Score = 35.9 bits (79), Expect = 0.72
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = -2
Query: 514 QELGQ--TIKAGKGLNSSQSSREALDNG*PIRKLYXVGQAVGYFWSTNKKDRQFEELLRN 341
+E+GQ ++A LN + +++ +DNG + + AV FW T+K D + ELL+
Sbjct: 305 EEIGQKYVVRALIKLNRLEEAQKLIDNGVELSLIEKAKFAVE-FWKTDKDDNRLHELLKY 363
Query: 340 GSLKFQFTQVKAVSS 296
K +F ++K++++
Sbjct: 364 PYTK-EFAEIKSMAA 377
>UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse
transcriptase-like; n=1; Danio rerio|Rep: PREDICTED:
similar to reverse transcriptase-like - Danio rerio
Length = 249
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 63 FAVGQVDGIRSRGRSPTR*SDLVKTLTSLPITEAIKTAEDRK 188
F +G V G R RGR TR D +KT T+L + E + +RK
Sbjct: 207 FTLGAVSGSRRRGRQRTRWLDTIKTDTNLNMEELKEAVRNRK 248
>UniRef50_Q5ZBP1 Cluster: Putative uncharacterized protein
P0704D04.4; n=3; Oryza sativa|Rep: Putative
uncharacterized protein P0704D04.4 - Oryza sativa subsp.
japonica (Rice)
Length = 446
Score = 34.3 bits (75), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 574 VNCNTTHYRANWVPGPPSSAQELGQTIKAGKGLNSSQSSREALDNG 437
+NC R W P PP+S +G+ AG+G +Q S + D G
Sbjct: 138 LNCCRPMGRVKWRPPPPTSV--MGEIAAAGRGAEDTQPSEDKADKG 181
>UniRef50_O75154 Cluster: Rab11 family-interacting protein 3; n=9;
Theria|Rep: Rab11 family-interacting protein 3 - Homo
sapiens (Human)
Length = 756
Score = 33.5 bits (73), Expect = 3.9
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
P +CP FR+ G S +R + + F PFPA ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180
>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
uncultured bacterium|Rep: Non-ribosomal peptide
synthetase - uncultured bacterium
Length = 338
Score = 33.1 bits (72), Expect = 5.1
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 563 YDSL*GELGTGPPLE 519
YDSL GELGTGPPLE
Sbjct: 278 YDSLYGELGTGPPLE 292
>UniRef50_Q4PC19 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1020
Score = 33.1 bits (72), Expect = 5.1
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +2
Query: 92 ITRTL-TYPLV*SGKDSHQPANNRG-----YKDRRGQEDVETHSASSGPH 223
ITR L T V SG+++ PA+NR Y+ RR EDV ++ S GP+
Sbjct: 42 ITRCLATSVSVASGREASSPASNRNQDRSDYRPRRRDEDVRSNHRSGGPN 91
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 32.7 bits (71), Expect = 6.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 81 DGIRSRGRSPTR*SDLVKTLTSLPITEAIKTAEDRKTWRRILHRVVHI 224
+G R RGR P R D V+ L EA + A+DR W I H+
Sbjct: 471 NGRRPRGRPPKRWKDQVQYDVGLSTQEAEQRAQDRSDWNMISRLEGHL 518
>UniRef50_Q3ABG3 Cluster: Conserved domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: Conserved
domain protein - Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008)
Length = 215
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 417 YSFRIG-QPLSRASRDDCEEFR 479
Y RI +P+ +ASRDDCEEFR
Sbjct: 80 YHIRIAHRPIKKASRDDCEEFR 101
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,559,662
Number of Sequences: 1657284
Number of extensions: 9818009
Number of successful extensions: 22665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22664
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -