Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1553
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    29   0.52 
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -2

Query: 427 RKLYXVGQAVGYFWSTNKKDRQFEELLRNGSLKFQFTQVKAVS 299
           +KLY VG++ G  WS N      E LL   SL   F  V  VS
Sbjct: 192 KKLYLVGESYGSIWSANFA----EALLSEPSLNINFMGVGIVS 230


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 538 VPGPPSSAQELGQTIKAGKGLNSSQSSREALDN 440
           + GP  + +EL    +A  GLNS+  S + L N
Sbjct: 95  IVGPTLTEEELASQDQAQSGLNSNSESPDDLQN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,137
Number of Sequences: 5004
Number of extensions: 38913
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)