Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1553
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0638 - 23871424-23871974,23872154-23872325                       32   0.40 
03_05_0751 - 27389910-27392105                                         30   1.2  
02_01_0768 + 5736778-5737341,5737451-5737612,5738678-5738707           29   3.7  
01_01_0037 - 281681-281785,282559-282924                               29   3.7  
01_01_1125 - 8920590-8924372                                           28   4.9  
03_06_0700 + 35616619-35617069,35619123-35619502                       28   6.5  
01_06_0766 - 31820168-31820509,31821898-31822110,31822330-318224...    28   6.5  
04_04_1681 + 35322992-35323765                                         27   8.6  

>01_05_0638 - 23871424-23871974,23872154-23872325
          Length = 240

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 550 RANWVPGPPSSAQELGQTIKAGKGLNSSQSSREALDNG 437
           R  W P PP+S   +G+   AG+G   +Q S +  D G
Sbjct: 3   RVKWRPPPPTSV--MGEIAAAGRGAEDTQPSEDKADKG 38


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 84  GIRSRGRSPTR*SDLVKTLTSLPITEAIKTAEDRKTWRRILHRV 215
           G RSRGR PT+  D+V   T L        A+DR+T   +L ++
Sbjct: 340 GTRSRGRKPTK-KDVVDLRTLLIHCAQAVAADDRRTANELLKQI 382


>02_01_0768 + 5736778-5737341,5737451-5737612,5738678-5738707
          Length = 251

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -3

Query: 213 LDAECVSTSS----CPRRSL*PRLLAGW*ESLPDQTSG*VSVRVILSRQPDQQQISRGKK 46
           ++ EC+++SS     PRR+  P L A    SLP    G  +  V       + + + GKK
Sbjct: 42  VEGECINSSSKRLEFPRRTAAPPLFASVGLSLPSAAKGRDNCDVARQLAAAEAEEAAGKK 101

Query: 45  R-GKELVNNQGLV 10
           R G+++    GL+
Sbjct: 102 RQGRKMKGGGGLL 114


>01_01_0037 - 281681-281785,282559-282924
          Length = 156

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 135 TLTSLPITEAIKTAEDRKTWRRILHRV 215
           TLT+     A  TA+  K+WR++L+RV
Sbjct: 82  TLTAADFLRAGATAKPHKSWRKLLYRV 108


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 236  TTLGYNIGLIGYCNYALT 289
            TT  YN+ + GYCNY LT
Sbjct: 995  TTRVYNLLISGYCNYGLT 1012


>03_06_0700 + 35616619-35617069,35619123-35619502
          Length = 276

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  FFSPCLFAVGQVDGIRSRGRSPTR*SDLVKTL 140
           F + CL  +  V+   +R   PTR SDLVKT+
Sbjct: 156 FGACCLLRIFSVNKTTTRAWPPTRASDLVKTI 187


>01_06_0766 -
           31820168-31820509,31821898-31822110,31822330-31822473,
           31822759-31822797,31822834-31822932,31823024-31823113
          Length = 308

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 147 LPITEAIKTAEDRKTWRRILHRVVHISN 230
           + + +A+KT ED K W+RI+  +  + N
Sbjct: 104 IAVKKALKTLEDEKEWKRIIQVIKWMFN 131


>04_04_1681 + 35322992-35323765
          Length = 257

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 378 FVDQKYPTACPTXYSFRIGQPLS 446
           F  +K+  ACPT YS+    P S
Sbjct: 200 FYSKKFKAACPTAYSYAYDDPTS 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,108
Number of Sequences: 37544
Number of extensions: 275550
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)