Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1553
         (596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98882-1|CAI95591.1|  756|Homo sapiens RAB11 family interacting ...    33   0.58 
BC051360-1|AAH51360.1|  756|Homo sapiens RAB11 family interactin...    33   0.58 
AL049542-2|CAI95788.1|  756|Homo sapiens RAB11 family interactin...    33   0.58 
AL023881-6|CAI95593.1|  756|Homo sapiens RAB11 family interactin...    33   0.58 
AF395731-1|AAL12940.1|  756|Homo sapiens eferin protein.               33   0.58 
AE006463-12|AAK61232.1|  756|Homo sapiens unknown function protein.    33   0.58 
AB014565-1|BAA31640.2|  760|Homo sapiens KIAA0665 protein protein.     33   0.58 

>Z98882-1|CAI95591.1|  756|Homo sapiens RAB11 family interacting
           protein 3 (class II) protein.
          Length = 756

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180


>BC051360-1|AAH51360.1|  756|Homo sapiens RAB11 family interacting
           protein 3 (class II) protein.
          Length = 756

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180


>AL049542-2|CAI95788.1|  756|Homo sapiens RAB11 family interacting
           protein 3 (class II) protein.
          Length = 756

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180


>AL023881-6|CAI95593.1|  756|Homo sapiens RAB11 family interacting
           protein 3 (class II) protein.
          Length = 756

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180


>AF395731-1|AAL12940.1|  756|Homo sapiens eferin protein.
          Length = 756

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180


>AE006463-12|AAK61232.1|  756|Homo sapiens unknown function protein.
          Length = 756

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 134 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 180


>AB014565-1|BAA31640.2|  760|Homo sapiens KIAA0665 protein protein.
          Length = 760

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 396 PTACPTXYSFRI-GQPLSRASRDDCEEFRPFPAFIV*PNSWALEGGPGT 539
           P +CP    FR+ G   S  +R + + F PFPA        ALE GPG+
Sbjct: 138 PASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTA--GELALEQGPGS 184


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,863,933
Number of Sequences: 237096
Number of extensions: 1456512
Number of successful extensions: 2881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2881
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)