Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1553
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-5|CAA92743.1|  230|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81545-5|CAB04440.1|  389|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z68337-5|CAA92743.1|  230|Caenorhabditis elegans Hypothetical
           protein M7.8 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 420 SFRIGQPLSRASRDDCEE 473
           SFR+ +PL+RAS+  CEE
Sbjct: 32  SFRVDEPLNRASKISCEE 49


>Z81545-5|CAB04440.1|  389|Caenorhabditis elegans Hypothetical
           protein F49H6.5 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 60  LFAVGQVDGIRSRGRSPTR*SDLVKTLTSLPITEAIK 170
           LFA   VD +R  G  PT  +DLV+ +  +  T  IK
Sbjct: 117 LFAAHGVDKVRLTGGEPTIRNDLVQIVEGISSTPGIK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,717
Number of Sequences: 27780
Number of extensions: 222568
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)