Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1553
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 297 ELTALT*VN*NFKLPLRRSSSNCLSFLFVDQKYPTACPTXYSFRIGQPLSRASRDDCEEF 476
           E TA+T V  N +  LR+S S      ++ +     CP   S+R    +     D+ +EF
Sbjct: 210 EQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEF 269


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +3

Query: 360 NCLSFLFVDQKYPTACPTXYSFRIGQPLSRASRDDCEEF-RPFPAFIV*PNSWALEG 527
           NC  +   D K  T C +     +      A RD  EEF RP   + +   S++  G
Sbjct: 611 NCTQYQIRDHKDVTQCISCRQGTVPDETHSACRDIPEEFLRPESGWAIGAMSFSATG 667


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 337 YHYVGALQIVCLFCLLTKNIL 399
           YH VGA  ++CL     K I+
Sbjct: 4   YHIVGASVLICLLNETAKAII 24


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 586 KRRPVNCNTTHYRANWVPGP 527
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,073
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)