Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1552
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 107 1e-24
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 84 1e-17
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 80 2e-16
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 76 3e-15
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 30 0.18
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 1.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 2.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 6.6
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 107 bits (256), Expect = 1e-24
Identities = 52/138 (37%), Positives = 85/138 (61%), Gaps = 4/138 (2%)
Frame = +3
Query: 3 VMRPLFQHYPDEPATYPIDDQYLLGDA-LLVKPVTTAGASSVEVYLPGDGPWYDVDTYVP 179
++ P F +P++ + IDDQ+ +GD+ LLVKPVT + +YL D ++D+ +
Sbjct: 707 ILYPQFLMHPEDEEGFAIDDQFYVGDSGLLVKPVTHPSIDKITIYLADDEVYFDLHDHTE 766
Query: 180 H--KGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALD-ANNSARG 350
+ KG ++ P + ++PV RGG I+ RER+RR++ L +DPFTL +A+ +A G
Sbjct: 767 YAGKGHQVV-PAPLGRVPVLLRGGNILITRERIRRAAELTRNDPFTLTIAVSKIGKNASG 825
Query: 351 SLYIDDGETYEYKNNKYI 404
LY+DDG T+ YK +Y+
Sbjct: 826 FLYLDDGVTFNYKKGEYL 843
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 83.8 bits (198), Expect = 1e-17
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Frame = +3
Query: 3 VMRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDG-----PWYDVD 167
++RPLF +P+EP+ D Q+++G ALLV PV V PGD WYD
Sbjct: 775 LIRPLFFEFPNEPSLANADRQFMVGSALLVTPVLEPNVDYVRGVFPGDNSTIWYDWYDHK 834
Query: 168 TYVPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSAR 347
IT ++ I V RGG I+P ++ ++ +P+ L+VALD++ A
Sbjct: 835 VIYRQHNENITLSAPLTHINVAIRGGNIIP-MQKPSLTTHETKQNPYDLLVALDSDRKAC 893
Query: 348 GSLYIDDGETYEYKNNKYI 404
GSLY+DDG + + ++ ++
Sbjct: 894 GSLYVDDGVSIQQESTLFV 912
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 80.2 bits (189), Expect = 2e-16
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Frame = +3
Query: 6 MRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDG-----PWYDVDT 170
+R LF +P++P +D Q+++GD+LLV PV V+ PGD WY+
Sbjct: 754 LRALFVEFPNDPTLADVDRQFMVGDSLLVTPVLEPNVEYVQGVFPGDNSTVWYDWYNHTE 813
Query: 171 YVPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARG 350
V +T + I V RGG+++P ++ ++ +PF L+VALD + SA G
Sbjct: 814 IVRQYNENVTLYAPLEHINVAIRGGSVLP-MQQPSLTTYESRQNPFNLLVALDRDGSATG 872
Query: 351 SLYIDDGETYE 383
LY+DDG + E
Sbjct: 873 ELYLDDGVSIE 883
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 76.2 bits (179), Expect = 3e-15
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Frame = +3
Query: 3 VMRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDGP--WYD--VDT 170
++RPLF +P + + +D Q+++G ALL+ P + ++ +PGD WYD +
Sbjct: 778 MVRPLFFEFPKQISLASVDKQFMIGTALLISPALEPNTTYIQGIIPGDNDTIWYDWYNHS 837
Query: 171 YVPHK-GPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSAR 347
+ H IT + + + RGG I+P ++ ++ ++P++L++A+D N A
Sbjct: 838 VINHDYDENITMSAPLGYVNIAVRGGNIIP-LQQPGYTTYESRNNPYSLLIAMDNNGFAS 896
Query: 348 GSLYIDDGETYEYKNNKYIYAKIEFGPDEMTYTLASEGAQYPT 476
GSLYIDDG + N + K+ + +T ++ P+
Sbjct: 897 GSLYIDDG--ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPS 937
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 334 LASSATTRVKGSSAISAEE-RRTRSRRGTMVPPR--WYTGILEMVTGCVMRGPL 182
+A+ T+ + +S ++++ R S T+ P+ WY L +TGCV+ G L
Sbjct: 37 IATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTL 90
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 1.2
Identities = 22/80 (27%), Positives = 30/80 (37%)
Frame = +2
Query: 2 GHEAPVPALPRRAGHLPHRRPVPXXXXXXXXXXXXXXXXLRGGIPARGRPVVRRGHLRAA 181
GH P+P P P P P RG +PA+GRP++ G + +A
Sbjct: 505 GHNGPMPMYPGMPTQFPAGGPAP----------GYPGMNARGPVPAQGRPMMMPGSVPSA 554
Query: 182 QRTPHHAAGHHLQDPGVPAR 241
A PG+P R
Sbjct: 555 GPAEAEAVP---AVPGMPER 571
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 222 IPVYQRGGTIVPRRERVRRSSALMADDPFT 311
IP + ++VP + SS+LM D P T
Sbjct: 663 IPPVTQASSLVPSKNNTASSSSLMLDSPVT 692
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 475 VGYWAPSLASVYVISSGPNSIL 410
VG WAP V V S G +SIL
Sbjct: 1323 VGPWAPRRVDVLVTSIGKDSIL 1344
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 194 AGSFVRHVSVHVVPR 150
AG V HV VH++PR
Sbjct: 89 AGQTVPHVHVHIIPR 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,114
Number of Sequences: 5004
Number of extensions: 31178
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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