Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1552
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...   118   2e-27
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...   118   2e-27
AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical ...   100   7e-22
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    85   4e-17
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    79   1e-15
U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    73   9e-14

>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical protein
            F40F9.6b protein.
          Length = 910

 Score =  118 bits (284), Expect = 2e-27
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 7/175 (4%)
 Frame = +3

Query: 6    MRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLP-GDGP---WYDVDTY 173
            MRPLF  + ++        Q+++G  +L +PV      +V+V LP G+     W++  + 
Sbjct: 686  MRPLFYEFENDDLLLEEQKQWMVGSGILARPVVEKDTFNVQVKLPRGEHKTERWFEWVSG 745

Query: 174  VPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGS 353
               +G  I     I+  P+YQRGGTI+P  +R+RRS+ LM DDP TL VALD+N ++ G 
Sbjct: 746  NEVRGESIYVDAPITFTPIYQRGGTIIPTWQRIRRSATLMKDDPITLFVALDSNENSNGE 805

Query: 354  LYIDDGETYEYKNNKYIYAKIEFGP-DEMTYTLASE--GAQYPTGAWLERVVVAG 509
            +Y+DDG T++Y++ +++ A  ++    + +  L  E    +Y    W+ERVVV G
Sbjct: 806  IYLDDGNTHDYQSGQFVKASFKYTTLSKNSAMLEGEHLDGKYAAKNWIERVVVRG 860


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical protein
            F40F9.6a protein.
          Length = 924

 Score =  118 bits (284), Expect = 2e-27
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 7/175 (4%)
 Frame = +3

Query: 6    MRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLP-GDGP---WYDVDTY 173
            MRPLF  + ++        Q+++G  +L +PV      +V+V LP G+     W++  + 
Sbjct: 700  MRPLFYEFENDDLLLEEQKQWMVGSGILARPVVEKDTFNVQVKLPRGEHKTERWFEWVSG 759

Query: 174  VPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGS 353
               +G  I     I+  P+YQRGGTI+P  +R+RRS+ LM DDP TL VALD+N ++ G 
Sbjct: 760  NEVRGESIYVDAPITFTPIYQRGGTIIPTWQRIRRSATLMKDDPITLFVALDSNENSNGE 819

Query: 354  LYIDDGETYEYKNNKYIYAKIEFGP-DEMTYTLASE--GAQYPTGAWLERVVVAG 509
            +Y+DDG T++Y++ +++ A  ++    + +  L  E    +Y    W+ERVVV G
Sbjct: 820  IYLDDGNTHDYQSGQFVKASFKYTTLSKNSAMLEGEHLDGKYAAKNWIERVVVRG 874


>AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical
            protein F52D1.1 protein.
          Length = 903

 Score =  100 bits (239), Expect = 7e-22
 Identities = 50/177 (28%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
 Frame = +3

Query: 3    VMRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDGP-WYDVDTYVP 179
            VMRP +  + ++  ++  D Q+++G+ LLVKPV       + +YLPG    WYD +T+  
Sbjct: 677  VMRPFWMEFIEDEPSWDEDRQWMVGNGLLVKPVLEEKVKELSIYLPGKRQVWYDWETHKA 736

Query: 180  HKGPRITQ-PVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNS-ARGS 353
               P   Q P  ++ I +Y RGGTI+P+   V+ ++    + P  L +A++     A G+
Sbjct: 737  RPSPGAVQIPAELNTIGLYHRGGTIIPKLSEVKLTTKENHEQPIILYIAVNQKGDFANGT 796

Query: 354  LYIDDGETYEYKNNKYIYAKIEFGPD-EMTYTLASEG----AQYPTGAWLERVVVAG 509
            +Y+DDGE+Y Y+   + Y    F  + +  +T+ ++      ++ +  +++++V+ G
Sbjct: 797  IYLDDGESYAYEKGDFAYWGFTFKREHDYLHTITNKNLDKKGKFDSDVYIDKIVIRG 853


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
            protein R05F9.12 protein.
          Length = 955

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
 Frame = +3

Query: 3    VMRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDGPWYDVDTY--- 173
            V+RP+F  YP +  T+ +  +++ G  +LV PV   G +SV  YLP D  WY +  Y   
Sbjct: 693  VIRPVFFEYPTDAETFNLGYEFMWGSRILVAPVIYQGTTSVNAYLPTD-RWYSLFDYRYG 751

Query: 174  -VPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARG 350
             +   G       T S+IPV+ RG +++PR+     ++A  + +PF L++A        G
Sbjct: 752  SIMSPGYATVPAPTTSRIPVFVRGYSVIPRQTPSITTTATRS-NPFELLIAPCPLGMGEG 810

Query: 351  SLYIDDGETYEYKNNKYIYAKIEF 422
            +LY DDGET     N Y Y + +F
Sbjct: 811  TLYWDDGETIVNDFNSYDYHQFDF 834


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical protein
            F53F4.8 protein.
          Length = 856

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
 Frame = +3

Query: 3    VMRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDGPWYDVDTYVPH 182
            V+RP+F  +P + AT  +  Q++ G  +LV PV   GA S  +YLP D  WY +  Y+  
Sbjct: 626  VVRPVFFEFPTDSATLDLGYQFMWGSGILVAPVVYQGAVSTSLYLPND-VWYSLFNYM-- 682

Query: 183  KGPR-----ITQP-VTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSA 344
             G R     IT P  T S+IPV+ RGG ++P R+    ++ +   +PF L++A      A
Sbjct: 683  YGSRIDPGFITVPSPTTSRIPVFVRGGYVIP-RQTPTTTTTMSRLNPFELLIAPCQLGRA 741

Query: 345  RGSLYIDDGETYEYKNNKYIYAKIEF 422
             G LY DDG+      + + Y + +F
Sbjct: 742  AGVLYWDDGQRIVDSFDTHDYHQFDF 767


>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical protein
            D2096.3 protein.
          Length = 936

 Score = 73.3 bits (172), Expect = 9e-14
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
 Frame = +3

Query: 3    VMRPLFQHYPDEPATYPIDDQYLLGDALLVKPVTTAGASSVEVYLPGDGPWYDV--DTY- 173
            V+RPLF  +P +  T  I +Q+L G AL++ P    G +SV  Y P D  WY +  +TY 
Sbjct: 698  VIRPLFFEFPKDEETLNISEQFLWGSALMIAPALYQGQTSVHAYFPSD-TWYSLQPETYG 756

Query: 174  -VPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARG 350
                 G         S  PV+ RGG ++PR+     ++A     PF L++ +  N ++ G
Sbjct: 757  QKMFSGFNDVNAPLSSLTPVFVRGGFVLPRQSPGTTTTASRL-SPFELLITVKTNAASSG 815

Query: 351  SLYIDDGE 374
             LY D G+
Sbjct: 816  DLYYDGGD 823


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,632
Number of Sequences: 27780
Number of extensions: 198099
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)