Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1552
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 239 RRNHSAAPGARATLLRAD 292
           +R HS  PG    LLRAD
Sbjct: 107 KRLHSRLPGRNFNLLRAD 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +2

Query: 188 TPHHAAGHHLQDP--GVPARRNH 250
           +PHH  G+H   P  G P   +H
Sbjct: 333 SPHHQHGNHTMGPTMGPPHHHHH 355


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 258 AALWFRRAGTPG 223
           A  WF  AGTPG
Sbjct: 66  AQAWFGFAGTPG 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,532
Number of Sequences: 438
Number of extensions: 2429
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)