Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1550
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 373 e-104
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 367 e-103
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 190 2e-49
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 116 3e-27
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.022
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 29 0.83
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.1
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 1.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 373 bits (917), Expect = e-104
Identities = 165/228 (72%), Positives = 195/228 (85%)
Frame = +3
Query: 3 RGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKK 182
RGHYT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKK
Sbjct: 109 RGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKK 168
Query: 183 SKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY 362
S L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY
Sbjct: 169 SNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTY 228
Query: 363 TNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHE 542
NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE
Sbjct: 229 ENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHE 288
Query: 543 QLFVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPQDVNAGI 686
V EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV A +
Sbjct: 289 SNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAV 336
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 367 bits (904), Expect = e-103
Identities = 163/228 (71%), Positives = 194/228 (85%)
Frame = +3
Query: 3 RGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKK 182
RGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y KK
Sbjct: 105 RGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKK 164
Query: 183 SKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY 362
SKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y
Sbjct: 165 SKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSY 224
Query: 363 TNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHE 542
NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE
Sbjct: 225 ENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHE 284
Query: 543 QLFVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPQDVNAGI 686
V EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV A +
Sbjct: 285 SNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAV 332
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 190 bits (463), Expect = 2e-49
Identities = 88/228 (38%), Positives = 135/228 (59%)
Frame = +3
Query: 3 RGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKK 182
+GHYT G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +Y +
Sbjct: 103 KGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDR 162
Query: 183 SKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY 362
F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y
Sbjct: 163 MMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSY 222
Query: 363 TNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHE 542
+LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + +
Sbjct: 223 DDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQ 282
Query: 543 QLFVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPQDVNAGI 686
+ V E+T F+ N MV DPRHG+Y+ L+RG V ++V+ I
Sbjct: 283 AVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQI 330
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 116 bits (279), Expect = 3e-27
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 5/230 (2%)
Frame = +3
Query: 12 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKL 191
Y+ + I + ++D I + AD L+GF + H L+ERL+ Y KK
Sbjct: 108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQ 167
Query: 192 EFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTN 368
++++P Q VS VV+PYNS+L ++D ++DN A+ I L + PT+
Sbjct: 168 TYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQ 227
Query: 369 LNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYH 539
N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E
Sbjct: 228 QNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAI 287
Query: 540 EQLFVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPQDVNAGI 686
+ V ++ P NQMV +P + +++ + +G+ P DV+ +
Sbjct: 288 RKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSL 337
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 473 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 312
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 445 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFSSPRSQTHASSPPT 591
SPS+ + +P + RT S R T+ S +SP S+ HA + T
Sbjct: 334 SPSAEFSHQSSPYLVPNSGRTLNSENARESTIRSVNSPFSEDHADASLT 382
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 442 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFSSPRSQTHASSPPTRW*NATPV 615
TS S L+ + +++ T S+ P PT+ S S+P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 616 MASTWLAVCCTVVTSYP 666
++ CT TS P
Sbjct: 441 TSTPLATTNCTTSTSVP 457
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +1
Query: 445 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFSSPRSQTHASSPPTRW*NATPVMAS 624
+P+ T TP++T++ T +S+P T + S+P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466
Query: 625 TWLAVCCTVVTSYP 666
CT TS P
Sbjct: 467 PLTTTNCTTSTSIP 480
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 475 TPVSTSHWSRTRQSSLPRRPTMNSFSSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 654
TP++T++ T +S+P T + S+P + T+ ++ + +TPV +S + T V
Sbjct: 466 TPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV 522
Query: 655 TSYP 666
TS P
Sbjct: 523 TSTP 526
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 475 TPVSTSHWSRTRQSSLPRRPTMNSFSSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 654
TP++T++ T +S+P T + S+P + T+ ++ + +TPV ++ CT
Sbjct: 443 TPLATTNC--TTSTSVPYTSTPVT-STPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTS 499
Query: 655 TSYP 666
TS P
Sbjct: 500 TSVP 503
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 445 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFSSPRSQTHASSP 585
SPS LT L S++ S + + + R+ T +S SSP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.9
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = -2
Query: 506 VRDQWEVDTGVRHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAA 327
V D VDT V + +A ES R++ D S Q + E T A
Sbjct: 454 VADDDAVDTSVTATDDFD-ASASSSNAYESYRNTYTDDMDSSSIYQTSLSNVKTEETTPA 512
Query: 326 DV---IDGFIV-----DHESTVRVLKGCVGGEDRVVGLDDGSGNLRRGVDG 198
+ +DG ++ +HE V+ G E ++ DDGSG +R +DG
Sbjct: 513 EPASKVDGVVLYDFTGEHEG---VITASEGQEFTLLEPDDGSGWVRVKIDG 560
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 511 QSSLPRRPTMNSFSSPRSQTHASSPPTR 594
+ SLPRRP+ ++P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 671 ILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDEKLFMVGLLGRDDWRVRDQW 492
+LGY ++ A++V+A + V HL+ G D + K G D R Q+
Sbjct: 413 LLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDMLVDRVQY 465
Query: 491 EVDTGVR 471
E++ G++
Sbjct: 466 ELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +3
Query: 561 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPQDVNAGI 686
+ ACFEP N C H K C L + +D N +
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 467 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 294
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,474
Number of Sequences: 5004
Number of extensions: 60544
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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