Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1550
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.39 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   4.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
 Frame = -1

Query: 687 RCPRSHPGVRRHHGTAYSKPC-----TCHDGGRISPS 592
           +CPR H  V   +G  Y+  C      CH G  ++ S
Sbjct: 109 KCPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKS 145


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 666 GVRRHHGTAYSKPCTCHDGGRISPSGW 586
           G  + H   ++ PC CH  G+     W
Sbjct: 30  GALKMHIRTHTLPCKCHLCGKAFSRPW 56


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 52  ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 156
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -1

Query: 684 CPRSHPGVRRHHGTAYSKPCTC 619
           CPR+ PG ++        P  C
Sbjct: 92  CPRAKPGEKKFRKVITKAPLEC 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,309
Number of Sequences: 438
Number of extensions: 4472
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)