Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1549
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   0.62 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    26   2.5  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    26   3.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   4.4  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   5.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.8  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   5.8  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   7.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.6  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 441 HGRLSAA*GEPLTGSPPGPVTPAASK--PFSPATTANSTALS 322
           H R+ +A     T SPP P+TP+ S+  PFS +T + ST  S
Sbjct: 356 HPRVFSANSAFSTTSPP-PLTPSTSRDYPFSASTISPSTPFS 396


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 383 TGPGGEPVKGSPYAADKRPWL 445
           TG GGE + G P+A +  P L
Sbjct: 71  TGMGGESIYGEPFAVETHPRL 91


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 204 NVKSGYGFINRNDTKEDVFVHQTAIVRNNPRK 299
           N K  Y + + ++  E +F   T IV NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 388  TSNTSCFKAFLPGNHGKLH--RLIMSPTERTALRGLLRTMAV*CTNTSSLVSFLLMKPYP 215
            T N    K FL  N   L   + +  PTE T++  L   + V CT    +VS   ++   
Sbjct: 1126 TRNMPSLKKFLTVNQDPLRIVKELYIPTESTSVHFLKNKLCVGCTRGFEVVSLDNLETQS 1185

Query: 214  LL 209
            LL
Sbjct: 1186 LL 1187


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 408 LTGSPPGPVTPAASKPFSPATTANSTALSCRRPSAQP 298
           L GSPP P +   S   S +TT  + ++    P  +P
Sbjct: 529 LAGSPPSPSSSTKSASSSYSTTTPAFSIGPLTPMTKP 565


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 429 SAA*GEPLTGSPPGPVTPAASKPFSPATTANST 331
           ++A   PLT       T A+S P S  ++ANST
Sbjct: 301 TSASSTPLTSVNSTTTTSASSTPLSSVSSANST 333


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 305 HSLTWVVTDDGSLMHKHIFLGVIPVDETISTLDVE 201
           H L  VV DD  +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 444 SHGRLSAA*GEPLTGSPPGPVTPAA---SKPFSPATTANSTALSCRRPSAQPYV 292
           +H   +    E L    P P +PAA   + P + A+ A + A++  RP++ P V
Sbjct: 94  AHPNTTTTVSENLPEEVPPPYSPAATASNTPQNEASPAATEAVNHERPASPPPV 147


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 411 PLTGSPPGPVTPAASKPFS-PATTANSTALS 322
           P++ SPP    P  +KP S P+   N+T+++
Sbjct: 751 PVSSSPPHNDAPPKAKPISAPSELPNTTSVA 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,101
Number of Sequences: 5004
Number of extensions: 30722
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)