Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1549
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 91 5e-19
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 56 2e-08
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 53 1e-07
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 48 3e-06
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 48 3e-06
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 44 7e-05
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 44 7e-05
Z22178-8|CAD82913.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 2.2
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 2.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 2.9
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 28 3.8
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 3.8
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 28 3.8
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 3.8
U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protei... 27 5.1
U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z34800-3|CAA84322.2| 722|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z34800-2|CAA84324.2| 842|Caenorhabditis elegans Hypothetical pr... 27 6.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 6.7
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 6.7
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 6.7
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 6.7
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 6.7
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 27 8.9
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 27 8.9
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 27 8.9
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 27 8.9
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 27 8.9
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 27 8.9
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 90.6 bits (215), Expect = 5e-19
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIVRNNPRKAVRSVGD 320
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI+ NNP K +RS+GD
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGD 67
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 323 DKAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 433
++ V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 68 NEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIVRNNPRK-AVRSVGD 320
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGD 113
Score = 36.7 bits (81), Expect = 0.008
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 323 DKAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 421
D+ V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 114 DEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIVRNNPRK-AVRSVGD 320
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI +++ K +R++ D
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLAD 111
Score = 34.7 bits (76), Expect = 0.033
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 323 DKAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 421
++ V F +V G+ G EAA VTGP G V GS Y
Sbjct: 112 EEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIVRNNPRK 299
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIK 131
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 323 DKAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 424
D+ V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 140 DEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIVRNNPRK 299
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIK 131
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 323 DKAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 424
D+ V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 140 DEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 43.6 bits (98), Expect = 7e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFINRNDTKEDVFVHQT 272
G+ KWFNV GYGF+ + T ED+FVHQ+
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS 52
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 43.6 bits (98), Expect = 7e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFINRNDTKEDVFVHQT 272
G+ KWFNV GYGF+ + T ED+FVHQ+
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS 83
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 43.6 bits (98), Expect = 7e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFINRNDTKEDVFVHQT 272
G+ KWFNV GYGF+ + T ED+FVHQ+
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS 83
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 43.6 bits (98), Expect = 7e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFINRNDTKEDVFVHQT 272
G+ KWFNV GYGF+ + T ED+FVHQ+
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS 83
>Z22178-8|CAD82913.1| 307|Caenorhabditis elegans Hypothetical
protein F54C8.7b protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 405 TGSPPGPVTPAASKPFSPATTANSTALS 322
T SPP P P A PF+P T +S+ S
Sbjct: 5 TASPPEPSAPPADSPFAPVTQNDSSPTS 32
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 356 PRQPRQTPPPYHVADRAHSLTWVVTDDGSLMHKH 255
P+ + PY V+ A SL +VT GSL H H
Sbjct: 207 PKMGIECRKPYIVSSEASSLEDLVTSTGSLTHDH 240
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 356 PRQPRQTPPPYHVADRAHSLTWVVTDDGSLMHKH 255
P+ + PY V+ A SL +VT GSL H H
Sbjct: 207 PKMGIECRKPYIVSSEASSLEDLVTSTGSLTHDH 240
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ ++P
Sbjct: 284 GGPPGPFDPS-GAPPSGGPPGPFDPSGAQP 312
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 404 GGPPGPFNPS-GAPPSGGPPGPFNPSGAPP 432
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 419 GGPPGPFNPS-GAPPSGGPPGPFNPSGAPP 447
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 434 GGPPGPFNPS-GAPPSGGPPGPFNPSGAPP 462
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 449 GGPPGPFNPS-GAPPSGGPPGPFNPSGAPP 477
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKPFSPATTANSTALSCRRPSAQPYVGCYGR 277
GG G + + G P +G PPGP P+ + P T L S + +GR
Sbjct: 494 GGPPGPFNPS-GAPPSGGPPGPFDPSGAPPSGMPPVPLPTDLPIPSESPSFFQWIFGR 550
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 209 GGPTGPFDPS-GAPPSGGPPGPFNPSGAPP 237
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 224 GGPPGPFNPS-GAPPSGGPPGPFDPSGAPP 252
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 239 GGPPGPFDPS-GAPPSGGPPGPFNPSGAPP 267
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 254 GGPPGPFNPS-GAPPSGGPPGPFDPSGAPP 282
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 314 GGPPGPFNPS-GAPPSGGPPGPFDPSGAPP 342
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 329 GGPPGPFDPS-GAPPSGGPPGPFNPSGAPP 357
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 344 GGPPGPFNPS-GAPPSGGPPGPFDPSGAPP 372
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 389 GGPPGPFDPS-GAPPSGGPPGPFNPSGAPP 417
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + + G P +G PPGP P+ + P
Sbjct: 464 GGPPGPFNPS-GAPPSGGPPGPFDPSGAPP 492
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 479 GGPPGPFDPS-GAPPSGGPPGPFNPSGAPP 507
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 179 GGPPGPFGPS-GAPPSGGPPGPFNPSEAPP 207
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 269 GGPPGPFDPS-GAPPSGGPPGPFDPSGAPP 297
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 359 GGPPGPFDPS-GAPPSGGPPGPFDPSGAPP 387
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 374 GGPPGPFDPS-GAPPSGGPPGPFDPSGAPP 402
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 450 GGSHGRLSAA*GEPLTGSPPGPVTPAASKP 361
GG G + G P +G PPGP P+ + P
Sbjct: 164 GGPPGLFDPS-GAPPSGGPPGPFGPSGAPP 192
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 417 GEPLTGSPPGPVTPAASKP 361
G P +G PPGP P+ + P
Sbjct: 144 GAPPSGGPPGPFDPSGAPP 162
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 429 SAA*GEPLTGSPPGPVTPAASKPFSPATTANSTALS 322
SAA PL GP++P+ P + A T A+S
Sbjct: 181 SAAAATPLISGKAGPMSPSTGSPINVAATVLQNAVS 216
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 429 SAA*GEPLTGSPPGPVTPAASKPFSPATTANSTALS 322
SAA PL GP++P+ P + A T A+S
Sbjct: 181 SAAAATPLISGKAGPMSPSTGSPINVAATVLQNAVS 216
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 444 SHGRLSAA*GEPLTGSPPGPVTPAASKPFSPATTANSTAL 325
S +L AA L PP + S+P SP+T NS A+
Sbjct: 181 SIAKLRAATAVKLAHPPPALLIGVPSEPMSPSTYGNSAAI 220
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 426 AA*GEPLTGSPPGPVTPAASKPFSPATTANSTALSCRR 313
AA G+P+ G TPA S P P +A + S RR
Sbjct: 148 AAQGKPVQKQARGSKTPAVSTPVIPPRSAPTKTRSARR 185
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -3
Query: 411 PLTGSPPGPVTPAASKP-FSPATTANSTALSCRRPSAQP 298
PL GSPPG P P +P T T + P P
Sbjct: 80 PLPGSPPGMAGPPLLPPAVAPPTNGQETLVGINNPVQPP 118
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 426 AA*GEPLTGSPPGPVTPAASKPFSPATTANSTALSCRR 313
AA G+P+ G TPA S P P +A + S RR
Sbjct: 148 AAQGKPVQKQARGSKTPAVSTPVIPPRSAPTKTRSARR 185
>U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protein
53 protein.
Length = 160
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 353 GEKGFEAAGVTGPGGEPVK-GSPYAADKRP 439
G+KGF GV GP GEP + G Y +D P
Sbjct: 49 GDKGFP--GVAGPAGEPGEPGHIYVSDGPP 76
>U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical
protein M01H9.2 protein.
Length = 439
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 387 PVTPAASKPFSP--ATTANSTALSCRRPSAQPYVGCYGRW 274
PV P S+P+SP T S++L R + Q Y Y ++
Sbjct: 200 PVQPQVSQPYSPWSPTLGLSSSLDSSRRAPQNYFSSYSQY 239
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 462 GNIG-GGSHGRLSA--A*GEPLTGSPPGPVTPAASKPFSPA 349
GN G G +G A A G+P +P P+TP A P PA
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPA 224
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 350 AGEKGFEAAGVTGPGGEPVKGSPYAADKRPWLPPPIFP 463
AG KG AG GPGG+P P + R P P P
Sbjct: 173 AGNKG--PAGPPGPGGKPGPAGPPGENGRNGEPQPGSP 208
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 462 GNIG-GGSHGRLSA--A*GEPLTGSPPGPVTPAASKPFSPA 349
GN G G +G A A G+P +P P+TP A P PA
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPA 224
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 462 GNIG-GGSHGRLSA--A*GEPLTGSPPGPVTPAASKPFSPA 349
GN G G +G A A G+P +P P+TP A P PA
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPA 224
>Z34800-3|CAA84322.2| 722|Caenorhabditis elegans Hypothetical
protein F45H7.2b protein.
Length = 722
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 417 GEPLTGSPPGPVTPAASK---PFSPATTANSTALSC 319
G L+ SP GP T + P+S AT+++++A SC
Sbjct: 130 GSSLSRSPSGPHTQRIRQSLLPYSNATSSSASAYSC 165
>Z34800-2|CAA84324.2| 842|Caenorhabditis elegans Hypothetical
protein F45H7.2a protein.
Length = 842
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 417 GEPLTGSPPGPVTPAASK---PFSPATTANSTALSC 319
G L+ SP GP T + P+S AT+++++A SC
Sbjct: 250 GSSLSRSPSGPHTQRIRQSLLPYSNATSSSASAYSC 285
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 405 TGSPPGPVTPAASKPFSPATTANSTALSCRRPSAQPYV 292
TGSP T +KP P++T TA P++QP V
Sbjct: 530 TGSPTTQTTAPVTKPTVPSST-TQTAPPVTTPTSQPPV 566
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 405 TGSPPGPVTPAASKPFSPATTANSTALSCRRPSAQPYV 292
TGSP T +KP P++T TA P++QP V
Sbjct: 586 TGSPTTQTTAPVTKPTVPSST-TQTAPPVTTPTSQPPV 622
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 462 GNIG-GGSHGRLSA--A*GEPLTGSPPGPVTPAASKPFSPA 349
GN G G +G A A G+P +P P+TP A P PA
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPA 224
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 462 GNIG-GGSHGRLSA--A*GEPLTGSPPGPVTPAASKPFSPA 349
GN G G +G A A G+P +P P+TP A P PA
Sbjct: 184 GNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPA 224
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 462 GNIGG-GSHGRLSAA*GEPLTGSPPGPVTPAASKPFSPATTANS 334
GN+G G+ G++ G P PPGP P+ + P P +S
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGA-PGHPGQAGSS 301
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 402 GSPPGPVTPAASKPFSPATTANSTALSCRRPSAQPYVGC 286
G P P TP A P TA L+C P +Q V C
Sbjct: 110 GQPGAPGTPGAPGPKGDDNTATFAPLTC-APVSQDCVKC 147
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 402 GSPPGPVTPAASKPFSPATTANSTALSCRRPSAQPYVGC 286
G P P TP A P TA L+C P +Q V C
Sbjct: 122 GQPGAPGTPGAPGPKGDDNTATFAPLTC-APVSQDCVKC 159
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 411 PLTGSPPGPVTPAASKPF--SPATTANSTALSCRRPSA 304
P SPP TP P +P T+A ST++ RRP++
Sbjct: 764 PPKTSPPVSNTPITVAPVHAAPTTSAPSTSVVTRRPTS 801
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 411 PLTGSPPGPVTPAASKPF--SPATTANSTALSCRRPSA 304
P SPP TP P +P T+A ST++ RRP++
Sbjct: 871 PPKTSPPVSNTPITVAPVHAAPTTSAPSTSVVTRRPTS 908
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -3
Query: 351 ATTANSTALSCRRPSAQPYVGCYGRWQSDAQTHLPWCH 238
A T + C +P A P C G SD WCH
Sbjct: 742 AATCDVFTNPCNQPIALPATLCSGTGSSDTCGANMWCH 779
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -3
Query: 351 ATTANSTALSCRRPSAQPYVGCYGRWQSDAQTHLPWCH 238
A T + C +P A P C G SD WCH
Sbjct: 1160 AATCDVFTNPCNQPIALPATLCSGTGSSDTCGANMWCH 1197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,281,623
Number of Sequences: 27780
Number of extensions: 198738
Number of successful extensions: 1131
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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