Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1549
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 411 AHLMLQTSARGYHRQYFP 464
           +H++ Q S R Y +Q FP
Sbjct: 447 SHILQQPSIRTYTQQQFP 464


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 356 PRQPRQTPP--PYHVADRAHSLT 294
           P+   +T P  PYHV+D   ++T
Sbjct: 251 PKPQTKTKPTSPYHVSDHKAAIT 273


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 390 GPVTPAASKPFSPATTANST 331
           GP TP+A    S AT A +T
Sbjct: 237 GPATPSAVVATSNATAAMTT 256


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 65  VIGERRWWQRW 33
           VI +R WW+R+
Sbjct: 70  VIDKRPWWERY 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,652
Number of Sequences: 438
Number of extensions: 2153
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)