Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1548
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   1.5  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   4.6  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.1  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 308 LRKPFTTPLPVLYNKYLPMMKRLHYAYTR---KHVTENACFFLKFITIAGRAYFFL 150
           L K  +TP+  LY  YL M+   HY+  +   K + +N   F  F + A +  FF+
Sbjct: 585 LVKIASTPMSKLYEDYLVMLFAFHYSMFQVMTKLIADNLVHF-SFQSCACQTLFFI 639


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 322 SKRPNTYFNWFTSTQFGEHIPHMYVSLKLPKAPYHSLVYRRK 447
           S R    +  F      E     Y + KL + P H+++Y+RK
Sbjct: 70  SPRVEGLYGMFLEATASEKDAMSYYNSKLSEDPTHTVIYKRK 111


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -3

Query: 249 ETFTLCIYKKTCNRKRLL 196
           +TFTLC+Y+K+  +K+++
Sbjct: 107 DTFTLCLYRKSKWKKQIV 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,351
Number of Sequences: 5004
Number of extensions: 43619
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)