Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1548
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 30 1.0
Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 4.1
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 27 5.5
AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical... 27 7.2
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical protein
K08H10.7 protein.
Length = 1020
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = -1
Query: 470 KSILSAYGFLRYTSEWYGALGSFNDTYICGMCSPNCVEVNQL-K*VFGLFEHKSVLRKPF 294
K I+S Y F + + +G LG+ + M + +++ K +GL + RKP
Sbjct: 905 KLIVSKYKFDFFLASHHGVLGTSRPGHYTVMYDDKGMSQDEVYKMTYGLAFLSARCRKPI 964
Query: 293 TTPLPVLY-NKYLPMMKRLHYAYTRKHVTENA 201
+ P+PV Y + K L+ Y ++ + A
Sbjct: 965 SLPVPVHYAHLSCEKAKELYRTYKEHYIGDYA 996
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = -1
Query: 470 KSILSAYGFLRYTSEWYGALGSFNDTYICGMCSPNCVEVNQL-K*VFGLFEHKSVLRKPF 294
K I+S Y F + + +G LG+ + M + +++ K +GL + RKP
Sbjct: 905 KLIVSKYKFDFFLASHHGVLGTSRPGHYTVMYDDKGMSQDEVYKMTYGLAFLSARCRKPI 964
Query: 293 TTPLPVLY-NKYLPMMKRLHYAYTRKHVTENA 201
+ P+PV Y + K L+ Y ++ + A
Sbjct: 965 SLPVPVHYAHLSCEKAKELYRTYKEHYIGDYA 996
>Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical
protein F09F3.12 protein.
Length = 307
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 250 IIGKYLLYK--TGKGVVNGFRRTLLCSKRPN 336
I+ YLLYK T +GV++GF + L PN
Sbjct: 23 ILNSYLLYKFSTRRGVISGFYKLCLVKTVPN 53
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 290 TPLPVLYNKYLPMMKRLHYAYTRKHVTENACFFLKFITIA 171
TPL VLY+ +++R H+A T K + + C L+ + A
Sbjct: 478 TPLSVLYSTEGSVLERHHFAQTIKLLQQEECSILENLPAA 517
>Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical
protein R08D7.6b protein.
Length = 734
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 290 TPLPVLYNKYLPMMKRLHYAYTRKHVTENACFFLKFITIA 171
TPL VLY+ +++R H+A T K + + C L+ + A
Sbjct: 481 TPLSVLYSTEGSVLERHHFAQTIKLLQQEECSILENLPAA 520
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 290 TPLPVLYNKYLPMMKRLHYAYTRKHVTENACFFLKFITIA 171
TPL VLY+ +++R H+A T K + + C L+ + A
Sbjct: 481 TPLSVLYSTEGSVLERHHFAQTIKLLQQEECSILENLPAA 520
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 307 RTLLCSKRPNTYFNWFTSTQFGEHIPHMYVSLKLPKAPYHSLVY 438
RT S+RP+ T E + + V +LP A YHS+ Y
Sbjct: 259 RTSSSSERPSAEEGSMTKKVSNEVVKRVAVKRELPSAEYHSVRY 302
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 228 YKKTCNRKRLLFFKIYYYC 172
YKK+ NR+RL FF+ ++ C
Sbjct: 115 YKKSSNRQRLGFFRRFFAC 133
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 228 YKKTCNRKRLLFFKIYYYC 172
YKK+ NR+RL FF+ ++ C
Sbjct: 115 YKKSSNRQRLGFFRRFFAC 133
>AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical
protein Y48C3A.14 protein.
Length = 855
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 21 C*VSFGGARVAVSKSHPSWLSLCSPTCPGETGKASG 128
C GG + ++SHP W C+ CP G G
Sbjct: 719 CLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVGLFEG 753
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,366
Number of Sequences: 27780
Number of extensions: 253634
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -