Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1546
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    97   1e-19
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   1.3  
UniRef50_Q11CL9 Cluster: Import inner membrane translocase, subu...    33   2.2  
UniRef50_Q54P36 Cluster: Putative uncharacterized protein; n=1; ...    32   2.9  
UniRef50_UPI00006CD2F1 Cluster: hypothetical protein TTHERM_0026...    32   3.8  
UniRef50_O36389 Cluster: Helicase-primase complex; n=1; Alcelaph...    32   3.8  
UniRef50_Q3CH99 Cluster: Ku; n=2; Thermoanaerobacter ethanolicus...    32   3.8  
UniRef50_UPI000155C771 Cluster: PREDICTED: similar to shugoshin-...    31   5.1  
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_A6UUV0 Cluster: Resolvase helix-turn-helix domain prote...    31   5.1  
UniRef50_A5ALX4 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  
UniRef50_Q9A7P9 Cluster: Sterol desaturase family protein; n=2; ...    31   8.9  
UniRef50_A1AKL6 Cluster: Putative uncharacterized protein precur...    31   8.9  
UniRef50_Q8IEH5 Cluster: Putative uncharacterized protein MAL13P...    31   8.9  
UniRef50_Q5A5F0 Cluster: Possible mitochondrial Complex I, subun...    31   8.9  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 96.7 bits (230), Expect = 1e-19
 Identities = 47/65 (72%), Positives = 52/65 (80%)
 Frame = +3

Query: 57  QLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCNFYLIP 236
           +L ++    ILADP DFVVPQSI KRPK LYKINLKQT+GI  T DTSKEK+NC FYLIP
Sbjct: 12  ELSQILFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIP 71

Query: 237 SIFIF 251
            IFIF
Sbjct: 72  RIFIF 76


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +1

Query: 328 RGGARYPIRPIVSR 369
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q11CL9 Cluster: Import inner membrane translocase, subunit
           Tim44; n=17; Alphaproteobacteria|Rep: Import inner
           membrane translocase, subunit Tim44 - Mesorhizobium sp.
           (strain BNC1)
          Length = 235

 Score = 32.7 bits (71), Expect = 2.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 222 FYLIPSIFIFFYLLNLLWTSTNHSRPKLAKSVRGRSR 332
           F+L+ ++ IFF L N+L   T   RP       GRSR
Sbjct: 10  FFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSR 46


>UniRef50_Q54P36 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 242

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 173 FCLF*VYFIQKFRSFNYRLRHY 108
           FC+F V+F+ K +SF YR  HY
Sbjct: 9   FCIFFVFFVYKTQSFEYREYHY 30


>UniRef50_UPI00006CD2F1 Cluster: hypothetical protein TTHERM_00268250;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00268250 - Tetrahymena thermophila SB210
          Length = 2100

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +3

Query: 144  LYKINLKQTEGILLTEDTSKEKRNCNFYLI-PSIFIFFYL---LNLLWTS 281
            +YKI +K T+ I+   DT K  +  NF LI P++F F Y    LN++ +S
Sbjct: 1254 VYKIKMKFTDDIIYIYDTDKFIKIANFDLIQPTLFNFTYYEGNLNIIGSS 1303


>UniRef50_O36389 Cluster: Helicase-primase complex; n=1; Alcelaphine
           herpesvirus 1|Rep: Helicase-primase complex -
           Alcelaphine herpesvirus 1 (wildebeest herpesvirus)
          Length = 478

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
 Frame = +3

Query: 111 VPQSIIKRPKLLYKINLK-------------QTEGILLTEDTSKEKRNCNF---YLIPSI 242
           +P   IK P +LY IN K             +   +L    T   K+N N    YL+ S+
Sbjct: 373 LPYVHIKHPHVLYIINFKFNTRFCCGSLSGDEIPKLLARYSTGHLKQNLNSWYSYLVFSV 432

Query: 243 FIFFYLLNLLWTSTNHSRPKLAKSVRGRSRGGPVPNSPY 359
             F  L NL W + NHS   LA   + +    PV   P+
Sbjct: 433 MNFCNLHNLQWIAFNHSMFYLASHAQDQVSTPPVAAVPF 471


>UniRef50_Q3CH99 Cluster: Ku; n=2; Thermoanaerobacter
           ethanolicus|Rep: Ku - Thermoanaerobacter ethanolicus
           ATCC 33223
          Length = 270

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +3

Query: 72  EIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRN 215
           +I  I  D T F+VP+ I  +P +L + ++K+T+ + + +   + K+N
Sbjct: 100 QIDPIYYDKTYFIVPEDIGTKPYVLLRDSMKETKRVAIAKVVIRSKQN 147


>UniRef50_UPI000155C771 Cluster: PREDICTED: similar to
           shugoshin-like protein 1, transcript variant A1; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           shugoshin-like protein 1, transcript variant A1 -
           Ornithorhynchus anatinus
          Length = 642

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 66  KLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEK 209
           KLE  T   D  DF + +S+   P    K+N ++ E   +T+D SKEK
Sbjct: 360 KLEESTGSGDAYDFYLEESVHLTPFRPSKVNKEEKEEKCMTDDDSKEK 407


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 17/24 (70%), Positives = 17/24 (70%)
 Frame = -3

Query: 331 LERPRTDLANFGLE*FVEVQRRFK 260
           LE   TDLANFGLE  VEVQR  K
Sbjct: 22  LENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_A6UUV0 Cluster: Resolvase helix-turn-helix domain protein;
           n=1; Methanococcus aeolicus Nankai-3|Rep: Resolvase
           helix-turn-helix domain protein - Methanococcus aeolicus
           Nankai-3
          Length = 179

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 111 VPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRN 215
           +P SI   PK+ YKIN  +   I++  D  K  RN
Sbjct: 31  LPNSIFNSPKMEYKINFMKQNHIIVEIDNEKRGRN 65


>UniRef50_A5ALX4 Cluster: Putative uncharacterized protein; n=1; Vitis
            vinifera|Rep: Putative uncharacterized protein - Vitis
            vinifera (Grape)
          Length = 1504

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +3

Query: 42   YEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCN 221
            Y++AL+  K++ Y  L  P   V P    +RP LLY   L    G +L +    EK    
Sbjct: 935  YQIALE--KIKEY--LLSPPVLVPPMP--RRPLLLYFSVLDMALGCMLAQLDDSEKEQAI 988

Query: 222  FYLIPSIFIF 251
            +YL P  ++F
Sbjct: 989  YYLNPLRYLF 998


>UniRef50_Q9A7P9 Cluster: Sterol desaturase family protein; n=2;
           Caulobacter|Rep: Sterol desaturase family protein -
           Caulobacter crescentus (Caulobacter vibrioides)
          Length = 274

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
 Frame = -1

Query: 360 YRANWVPGP-PSSGRGPIW------LILVLNDLW 280
           +RA W+PGP  + G GP+W      L+++ +D W
Sbjct: 87  FRAGWLPGPLIAKGWGPVWFWTSLVLMIIAHDAW 120


>UniRef50_A1AKL6 Cluster: Putative uncharacterized protein
           precursor; n=1; Pelobacter propionicus DSM 2379|Rep:
           Putative uncharacterized protein precursor - Pelobacter
           propionicus (strain DSM 2379)
          Length = 613

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 351 NWVPGPPSSGRGPIWLILVLNDLWKS-REGLKGRKI*KC-SELNKNYNFVFPLMCPP 187
           NW  G P  G+ P  +++  + +W S  +G++  +I +   +L+ +Y+++ P   PP
Sbjct: 164 NWGTGTPYGGQDPQAVVMGRDGIWTSGLDGVRSSQIVQFPGKLDCSYSYIDPTTLPP 220


>UniRef50_Q8IEH5 Cluster: Putative uncharacterized protein MAL13P1.70;
            n=5; cellular organisms|Rep: Putative uncharacterized
            protein MAL13P1.70 - Plasmodium falciparum (isolate 3D7)
          Length = 3377

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +3

Query: 78   YTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLT--EDTSKEKRNC-NFYLIPSIFI 248
            Y IL + + F + Q I+    ++ +I+ ++    +L+  E  SK+K N  NF+++ ++FI
Sbjct: 1195 YEILYNNSLFKLIQDILN--VMINEIDEEKIHYFILSYEEQLSKKKMNSHNFFIVDNMFI 1252

Query: 249  FFYLLNLLW 275
            F Y+L  ++
Sbjct: 1253 FIYILKNIY 1261


>UniRef50_Q5A5F0 Cluster: Possible mitochondrial Complex I, subunit
           1; n=1; Candida albicans|Rep: Possible mitochondrial
           Complex I, subunit 1 - Candida albicans (Yeast)
          Length = 126

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 SIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCNFYLIP 236
           SI+ R   LY IN    +  LL  DTS E  +C FY IP
Sbjct: 64  SIVARYSCLYNINCIILK--LLISDTSVENLSCLFYFIP 100


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,080,022
Number of Sequences: 1657284
Number of extensions: 7211307
Number of successful extensions: 19779
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19776
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)