Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1546
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 0.70
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 2.8
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 2.8
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 3.7
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 4.9
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 25 4.9
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 4.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 4.9
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 25 4.9
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 24 8.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 24 8.6
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 24 8.6
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 27.5 bits (58), Expect = 0.70
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 324 GRGPIWLILVLNDLWKSRE 268
G GPIW + N+ W+SRE
Sbjct: 916 GSGPIWQLKKENNYWESRE 934
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 2.8
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 72 EIYTILA-DPTDFVVPQ---SIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCNFYLIPS 239
E+Y +L DP F + S+I PK+ +++ ++ +LL + N +FY+
Sbjct: 1797 ELYQMLCNDPNVFDIESLVNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAP 1856
Query: 240 IF 245
+F
Sbjct: 1857 LF 1858
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 22 SDLYRFDTKSRYNYENWK 75
S+L+ T+ R++YENWK
Sbjct: 84 SELHIRATRGRWDYENWK 101
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.0 bits (52), Expect = 3.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 35 DSIRSRVTITKIGNI 79
DS+RSR+ + K GN+
Sbjct: 789 DSVRSRINVVKFGNL 803
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 42 YEVALQLRKLEIYTILADPTDFVVPQSI-IKRPKLLYKIN 158
Y KL + ++ DPT+ ++PQ + I+ P L N
Sbjct: 58 YNCCNSFAKLPVSSVSVDPTEDLIPQDMFIRDPDFLANDN 97
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 156 NLKQTEGILLT-EDTSKEKRNCNFYLIPSI 242
NLK I T E+ KEK N L+PS+
Sbjct: 115 NLKIESSITFTSEEIEKEKENIKSVLLPSV 144
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 4.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 42 YEVALQLRKLEIYTILADPTDFVVPQSI-IKRPKLLYKINLKQTEGILLTEDTSK 203
+ V +RK I TI +F P S +K+ +LL +NL EG+ L E + K
Sbjct: 427 FNVWSSVRKRAIETI-----EFFNPDSYNVKKIRLLNDLNLGSREGLTLREFSEK 476
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 172 SVCFKFILYKSLGLLIID*GTTKSVGSASIVY 77
S + +L K L L+ GT K+V SAS+VY
Sbjct: 398 SEAVRAVLSKPLSLIQGPPGTGKTVTSASVVY 429
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 231 IPSIFIFFYLLNLLWTSTNHS 293
IPS+F+ NLLW+ HS
Sbjct: 198 IPSLFVSTSSYNLLWSDLLHS 218
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 96 PTDFVVPQSIIKRPKLLYKINLKQTEGIL 182
P DFVV + +++ YK +L + EG +
Sbjct: 215 PCDFVVREVLVQIVHSFYKAHLDKEEGAM 243
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 23.8 bits (49), Expect = 8.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 24 RFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINL 161
RFIS+ L+ R Y + D +P I + PK+ KI L
Sbjct: 229 RFISVMKFRPLRWRNQHPYLLADRMEDLTLPVDIEQNPKVGRKITL 274
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +1
Query: 7 YSSSGSDLYRFDTKSRYNYENWKYI 81
++ +G+D YRF Y WK +
Sbjct: 894 HTGAGADKYRFSLNYGGTYSKWKTV 918
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,823
Number of Sequences: 5004
Number of extensions: 31644
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -