Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1546
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1278 + 27501180-27501190,27502661-27502675,27503299-275034... 29 1.1
10_08_0790 + 20586222-20586310,20586718-20586783,20588149-205883... 29 1.5
06_03_1112 - 27706813-27707175,27707225-27707299,27707515-277076... 28 2.0
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 28 2.6
03_05_0865 - 28365430-28367640 27 4.6
01_06_0589 - 30446684-30446790,30446977-30447187,30447316-304473... 27 6.1
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 26 8.1
02_04_0648 - 24716249-24717841 26 8.1
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 26 8.1
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 26 8.1
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 26 8.1
>12_02_1278 +
27501180-27501190,27502661-27502675,27503299-27503410,
27504340-27504439,27504579-27504641,27505208-27505318,
27505405-27505589,27506002-27506140,27506374-27506491,
27506568-27506669,27506904-27507158,27507315-27507426,
27507588-27507614
Length = 449
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 72 EIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCNFYLIPSIFIF 251
E Y+I D P+ ++K + +YK + + + + K+ N ++ +P+ FIF
Sbjct: 184 ENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIF 243
>10_08_0790 +
20586222-20586310,20586718-20586783,20588149-20588350,
20588491-20588548,20588850-20589052,20589147-20589204,
20589473-20589579
Length = 260
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 96 PTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
P D V Q I P+ LY I + + EG L+TE
Sbjct: 36 PKDASVHQQAIDEPQPLYNIPITRGEGTLITE 67
>06_03_1112 -
27706813-27707175,27707225-27707299,27707515-27707665,
27707953-27708190,27708280-27708490,27708565-27708680,
27708805-27708847,27709817-27709859,27709941-27710056
Length = 451
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 258 LLNLLWTSTNHSRPKLAKSVRGRSRGGPVPNSPYSE 365
L++ +W H K R RSR G + PY+E
Sbjct: 32 LIDPVWVGNGHDVDAYTKMTRKRSRTGQQQSDPYNE 67
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 197 IKGKTKL*FLFNSEHFHIFLPFKPSLDFHKSFKTKISQIGPRPLEGGPGT 346
IK K L +F ++ +H LPF S K + + + P GGPG+
Sbjct: 74 IKMKALLVGMFLTDKYHALLPFHASGGGVKDHRRRPGKAVPGAAGGGPGS 123
>03_05_0865 - 28365430-28367640
Length = 736
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 168 TEGILLTEDTSKEKRNCNFYLIPSIFIFFYLLNLLWTSTNHSRPKLAKSVRGRSRGGPVP 347
T I T K+ +F + + IFF L +L S + P+LA+ + + G VP
Sbjct: 663 THRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQSNSPVPPELARHEASKFKPGSVP 722
Query: 348 NSP 356
+ P
Sbjct: 723 DRP 725
>01_06_0589 -
30446684-30446790,30446977-30447187,30447316-30447399,
30447550-30448593
Length = 481
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 342 PGPPSSGRGPIWLILVLNDLWKSREGLKGR 253
P PP GRG W+I + D+ +R ++ R
Sbjct: 129 PFPPEEGRGCEWVIRSITDILAARPDVRIR 158
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 219 NFYLIPSIFIFFYLLNLLWTSTNH 290
N L+ S + F L NLLW ++ H
Sbjct: 108 NTRLVKSTIVHFQLRNLLWATSKH 131
>02_04_0648 - 24716249-24717841
Length = 530
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 234 PSIFIFFYLLNLLWTSTNHS----RPKLAKSVRGRSRGGPVPN 350
P++F++ +L+ +++HS R LA +R RG P PN
Sbjct: 72 PNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPN 114
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 ALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQ-TEGILLTEDTSKEKRNCN 221
+LQL LE+Y +L ++ P+ +LY+++ + T G + SK K NCN
Sbjct: 1329 SLQLHLLELYPLLEHIQKYIWPRLCKLDQLILYELHYQMITFGKVF---CSKSKPNCN 1383
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 66 KLEIYTILADPTDFVVPQSIIKR 134
+++++ +ADPT V P+SII R
Sbjct: 417 RIKVWIHVADPTSLVQPRSIIDR 439
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 336 PPSSGRGPIWLILVLNDLWKSREGLKG 256
PPSSG + L+L + D +KS E LKG
Sbjct: 321 PPSSGTVGMALVLNILDGYKSLEFLKG 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,479
Number of Sequences: 37544
Number of extensions: 188744
Number of successful extensions: 475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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