Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1546
         (369 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.                   30   2.0  
D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator...    30   2.0  
AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix...    30   2.0  
AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix...    30   2.0  
AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix...    30   2.0  
AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix...    30   2.0  

>X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.
          Length = 1586

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 12   LVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
            L+  R   +     L+  K E+ + L +  ++V+   +    K+LY+    Q +GILLT+
Sbjct: 929  LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH--MQAKGILLTD 986

Query: 192  DTSKEKR 212
             + K+K+
Sbjct: 987  GSEKDKK 993


>D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator
            hSNF2a protein.
          Length = 1572

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 12   LVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
            L+  R   +     L+  K E+ + L +  ++V+   +    K+LY+    Q +GILLT+
Sbjct: 933  LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH--MQAKGILLTD 990

Query: 192  DTSKEKR 212
             + K+K+
Sbjct: 991  GSEKDKK 997


>AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1572

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 12   LVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
            L+  R   +     L+  K E+ + L +  ++V+   +    K+LY+    Q +GILLT+
Sbjct: 933  LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH--MQAKGILLTD 990

Query: 192  DTSKEKR 212
             + K+K+
Sbjct: 991  GSEKDKK 997


>AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1590

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 12   LVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
            L+  R   +     L+  K E+ + L +  ++V+   +    K+LY+    Q +GILLT+
Sbjct: 933  LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH--MQAKGILLTD 990

Query: 192  DTSKEKR 212
             + K+K+
Sbjct: 991  GSEKDKK 997


>AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1572

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 12   LVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
            L+  R   +     L+  K E+ + L +  ++V+   +    K+LY+    Q +GILLT+
Sbjct: 933  LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH--MQAKGILLTD 990

Query: 192  DTSKEKR 212
             + K+K+
Sbjct: 991  GSEKDKK 997


>AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1590

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 12   LVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTE 191
            L+  R   +     L+  K E+ + L +  ++V+   +    K+LY+    Q +GILLT+
Sbjct: 933  LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH--MQAKGILLTD 990

Query: 192  DTSKEKR 212
             + K+K+
Sbjct: 991  GSEKDKK 997


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,194,931
Number of Sequences: 237096
Number of extensions: 1094281
Number of successful extensions: 2827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2827
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)