Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1546
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical...    29   1.4  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    28   1.8  
Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z73975-3|CAA98277.2|  269|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z70781-8|CAA94836.2|  269|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    27   4.2  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    27   5.5  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    27   5.5  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    27   5.5  
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    26   7.3  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    26   7.3  
AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    26   7.3  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    26   7.3  
EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folat...    26   9.7  
AL117207-18|CAB60405.3|  384|Caenorhabditis elegans Hypothetical...    26   9.7  

>AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical
           protein Y54G11A.12 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/93 (20%), Positives = 36/93 (38%)
 Frame = +3

Query: 42  YEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCN 221
           Y +++    +E+ TI  D       Q   K+   L  I    T  ++  + +        
Sbjct: 150 YAISINFGLVELLTIPEDQAH--AKQKAFKQHPCLPPIFFDDTSAVIQRDASLFNPHMYT 207

Query: 222 FYLIPSIFIFFYLLNLLWTSTNHSRPKLAKSVR 320
              I S+ + FY L++LW     + P ++   R
Sbjct: 208 CCFILSVLVCFYCLHVLWHLLPRNNPSMSSGTR 240


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 63  RKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDTSKEKRNCNFYLIPSI 242
           +K+   T+L  P DF++    I+R K  Y   LK+     + E   K ++  NF+ + S+
Sbjct: 139 KKVLATTVLVPPNDFLINPWSIRRTKYEYLQELKRHPDRAILE---KRRKVTNFHFLQSL 195



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   DIQLVRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGIL 182
           +  L+  R   +     L+  K E+ + L D  +FVV   +    K+LYK      +G+L
Sbjct: 572 ETMLIIRRLHKVLRPFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYK---HMQKGLL 628

Query: 183 L---TEDTSKEKRNCNFYL 230
           L   T   SK  RN   +L
Sbjct: 629 LDGKTNTGSKSLRNTMIHL 647


>Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical
           protein F49B2.5 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +3

Query: 48  VALQLRKLEIYTILADPTDFVVPQSIIKR---PKL--LYKINLKQTEGILLTE 191
           V + ++KL+  T  ADPTDF+    I+K+   PKL  LY +  +    +++TE
Sbjct: 263 VPVAVKKLKAGT--ADPTDFLAEAQIMKKLRHPKLLSLYAVCTRDEPILIVTE 313


>Z73975-3|CAA98277.2|  269|Caenorhabditis elegans Hypothetical
           protein F57A8.1 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 263 KPSLDFHKSFKTKISQIGP 319
           +PSLDF K  +T+I +I P
Sbjct: 232 RPSLDFEKMVQTRIEEIAP 250


>Z70781-8|CAA94836.2|  269|Caenorhabditis elegans Hypothetical
           protein F57A8.1 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 263 KPSLDFHKSFKTKISQIGP 319
           +PSLDF K  +T+I +I P
Sbjct: 232 RPSLDFEKMVQTRIEEIAP 250


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 195 TSKEKRNCNFYLIPSIFIFFYLLNLLWTSTNH 290
           T +E+ +CNF L+P   IFF +  L W    H
Sbjct: 13  TRRERGSCNFDLVP---IFFSVFLLFWFHPFH 41


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform b protein.
          Length = 1284

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 140  FRSFNYRLRHYEVCRVS 90
            FRS++YR+RH   C VS
Sbjct: 971  FRSWSYRMRHISGCTVS 987


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform a protein.
          Length = 1280

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 140  FRSFNYRLRHYEVCRVS 90
            FRS++YR+RH   C VS
Sbjct: 967  FRSWSYRMRHISGCTVS 983


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein.
          Length = 1280

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 140  FRSFNYRLRHYEVCRVS 90
            FRS++YR+RH   C VS
Sbjct: 967  FRSWSYRMRHISGCTVS 983


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 15  VRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKR-PKLLYKINLKQ-TEGILL 185
           V  R ++    V   LRK E+   L    DF V + I KR PK+ + ++L++  +G LL
Sbjct: 490 VMRRMLNETVPVGDVLRKFELSPKLQSHVDFEVRKIIRKRQPKMRWAVDLRKCIDGNLL 548


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 15  VRERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKR-PKLLYKINLKQ-TEGILL 185
           V  R ++    V   LRK E+   L    DF V + I KR PK+ + ++L++  +G LL
Sbjct: 490 VMRRMLNETVPVGDVLRKFELSPKLQSHVDFEVRKIIRKRQPKMRWAVDLRKCIDGNLL 548


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 222  NYNFVFPLMCPPSEGFLLFVLSL 154
            N +F+  L+CPPS+ F  F+L L
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRL 1666


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 222  NYNFVFPLMCPPSEGFLLFVLSL 154
            N +F+  L+CPPS+ F  F+L L
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRL 1666


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 273 WTSTNHSRPKLAKSVRGRSRGGP 341
           WT TNH RP      R +  G P
Sbjct: 54  WTETNHPRPTFCNYCREKLNGVP 76


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 273 WTSTNHSRPKLAKSVRGRSRGGP 341
           WT TNH RP      R +  G P
Sbjct: 54  WTETNHPRPTFCNYCREKLNGVP 76


>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 227 FNSEHFHIFLPFKPSLDFHKSFKTKISQIGPRPLEGGPGTQFA 355
           FNS+  H+F   +P L F  +F    S   PRP    P   FA
Sbjct: 533 FNSQEVHLFANEEPELPFFSTF----SSSAPRP--PSPDVSFA 569


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 225 YLIPSIFIFFYLLNLLWTSTNHSR 296
           YL+P++FI F +  + W S    R
Sbjct: 36  YLVPTVFIIFKVFKVFWGSLFEKR 59


>EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folate
           carrier protein.
          Length = 410

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 222 FYLIPSIFIFFYLLNLLWTSTN 287
           F L+ SIF FF++++L   S+N
Sbjct: 365 FALVASIFAFFFMISLFSKSSN 386


>AL117207-18|CAB60405.3|  384|Caenorhabditis elegans Hypothetical
           protein Y60A3A.10 protein.
          Length = 384

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +3

Query: 18  RERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLTEDT 197
           RE+ + +R ++ L  R  ++Y    D  DF   ++ +++     K  L + +GI+     
Sbjct: 82  REKCVQVRRDIVLNTRNKQVYCRQCDLEDFDSIRTFVQKLS-KGKFELDRIDGIVHNAAM 140

Query: 198 SKEKRNCN 221
            + +R  N
Sbjct: 141 MQSERAVN 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,882,583
Number of Sequences: 27780
Number of extensions: 172573
Number of successful extensions: 476
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)