Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1546
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.38 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.38 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.50 
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   2.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   3.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   8.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
 Frame = +3

Query: 21  ERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLT---- 188
           +R+ +I   +  +L   +   I+A    +V P +++   K+  +     TEG L T    
Sbjct: 153 DRYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLKVWGRYT---TEGFLTTCSFD 209

Query: 189 ----EDTSKEKRNCNF---YLIPSIFIFFYLLNLLWTSTNHSR 296
               ++ +K    C F   Y+IP IFI  +   LL +  NH +
Sbjct: 210 FLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEK 252


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
 Frame = +3

Query: 21  ERFISIRYEVALQLRKLEIYTILADPTDFVVPQSIIKRPKLLYKINLKQTEGILLT---- 188
           +R+ +I   +  +L   +   I+A    +V P +++   K+  +     TEG L T    
Sbjct: 153 DRYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLKVWGRYT---TEGFLTTCSFD 209

Query: 189 ----EDTSKEKRNCNF---YLIPSIFIFFYLLNLLWTSTNHSR 296
               ++ +K    C F   Y+IP IFI  +   LL +  NH +
Sbjct: 210 FLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEK 252


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 225 YLIPSIFIFFYLLNLLWTSTNHSRPKLAKSV 317
           Y+IP++ +    L +LW  +  +   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 167 NRRNPSDGGHIKGKTKL*FLFNSEHFHIF 253
           ++R P+    ++GK K     NSE+F IF
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIF 55


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 31  YRFDTKSRYNYENWKY 78
           Y+++  ++YNY N  Y
Sbjct: 96  YKYNYNNKYNYNNNNY 111


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 242 FHIFLPFKPSLDFH 283
           F  FLP  P+LD+H
Sbjct: 316 FDEFLPPPPNLDYH 329


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 186 TEDTSKEKRNCNFYLIPSIFIFFYL 260
           T D  K   N ++YL+ + +  +YL
Sbjct: 185 TADMKKTYNNIDYYLLAANYTGWYL 209


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 186 TEDTSKEKRNCNFYLIPSIFIFFYL 260
           T D  K   N ++YL+ + +  +YL
Sbjct: 185 TADMKKTYNNIDYYLLAANYTGWYL 209


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 90  ADPTDFVVPQSIIKR 134
           AD   FVVP   IKR
Sbjct: 87  ADILTFVVPHQFIKR 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,759
Number of Sequences: 438
Number of extensions: 2287
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)