Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1545
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    29   0.36 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    29   0.36 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   3.4  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   4.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   7.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   7.8  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 429 QNSRLSILTIDGL-STEHNSTPSFSVNKMGSPGMLVSLVSGDHKLHFVSKISNKWMESIV 253
           +NS  S  ++  L S+E N   + S+N  GS   LVS   G+ K+H + K  +K     +
Sbjct: 724 RNSLTSPYSVPELRSSESNQNKAGSINT-GSAVNLVSSKPGEQKVHIMYKEGHKLRR--I 780

Query: 252 YKS*CAKHHGGNLPSVCFVSKY 187
           YK   A   G    S+C VS Y
Sbjct: 781 YKMFPADSAG----SICAVSGY 798


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 462 SFSKVY*SLGCQNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSGDHKLHFVSK 283
           SFS +  +L    S LS  ++DGLS++ N    F+ N    P   V  +        VS 
Sbjct: 241 SFSPLTETLSSTISTLSNDSLDGLSSQKNEFTGFNSNSEWIPNDTVDYICNSDASSVVSN 300

Query: 282 ISN 274
           +S+
Sbjct: 301 LSD 303


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 300 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 136
           L +++ +S+ KW+E +  K  C K+   N  S     K F + +G+   A +   +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 299 SILLVKLVTSGWNLLCIKANV 237
           S +L  L+  GW ++C  ANV
Sbjct: 19  SCILAWLIEEGWEVICYMANV 39


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 79  KNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAV 228
           +N   L   E ++ +L  SKY   LST  +T    ++   K + +++ ++
Sbjct: 669 RNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSI 718


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 19  EIVNSDEKIQKTYELAEFDLKNLSSLESY 105
           E  +  E IQK YE+ E +   + S E++
Sbjct: 730 EASSQQENIQKAYEIIEKEFPTIGSAENH 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,384
Number of Sequences: 5004
Number of extensions: 40460
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)