Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1545
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         29   1.9  
10_08_0088 + 14734585-14734762,14735876-14736729                       28   3.3  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   4.4  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    28   4.4  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 122 NWRSANTWLCSAPWK*PSRCWK 187
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>10_08_0088 + 14734585-14734762,14735876-14736729
          Length = 343

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 354 NKMGSPGMLVSLVSGDHKLHFVSKISNKWMESIVYK 247
           N +GSP  L ++V+GD   H +SKI    ME +V K
Sbjct: 301 NFLGSPANLSAVVAGDGFKH-LSKICPSLMEELVVK 335


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 122 NWRSANTWLCSAPWK*PSRCWK 187
           +WR A  W+C  PW      W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 16  TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLE 186
           TE+  S+++  K  E+ E D+ + S  + YET ++  + SK    LS L   +P  +
Sbjct: 84  TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,309
Number of Sequences: 37544
Number of extensions: 251176
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)