Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1545
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   3.0  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      27   9.1  

>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 402 IDGLSTEHNSTPSFSVNKMGSPGML 328
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 420 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVS 313
           RL+I  I GLS+  +STPS  V++   P  L S+V+
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVA 295


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 336 PENPFCLQKTKGCCCAPSTD 395
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 402 IDGLSTEHNSTPSFSVNKMGSPGML 328
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 22  IVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 156
           I++S   ++   E+A  D +NLS L   ET+  K +    M ML+
Sbjct: 247 ILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 1   KVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 108
           K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 162 KIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 1   KVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 108
           K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 124 KIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical
           protein F01D5.9 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -1

Query: 155 LSIAMYLLSANLIFRVS*LSKLLRFFK 75
           + IA+YLL+  +I+ V  LSK+L+F K
Sbjct: 1   MGIAVYLLALVVIYVVFNLSKILKFVK 27


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 1   KVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 108
           K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 162 KIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 329  SIPGEPILFTENEGVLLCSVDRPSIVK 409
            SIPG  I+  +  GV+   ++RP +VK
Sbjct: 999  SIPGHVIISADLNGVIKVMINRPRLVK 1025


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 124 LALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKM-E 300
           L    +M + +TL  +QP+ EIF  K  + Q    +++    I N+   +  +  N M  
Sbjct: 129 LHFQSFMELFNTLIDSQPIAEIFNIKNHSLQQIQQLWTECVSIFNQLCKIQPDADNTMIA 188

Query: 301 FVVT*N**HKHSRRTHFVYR 360
            ++T     ++ +R +F +R
Sbjct: 189 NIITSKLPRRYIKRIYFGHR 208


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 329  SIPGEPILFTENEGVLLCSVDRPSIVK 409
            SIPG  I+  +  GV+   ++RP +VK
Sbjct: 999  SIPGHVIISADLNGVIKVMINRPRLVK 1025


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,992
Number of Sequences: 27780
Number of extensions: 227073
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)