Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1542
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    36   0.019
DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.      27   8.8  
DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-couple...    27   8.8  
AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF026211-1|AAB71293.2|  600|Caenorhabditis elegans Sodium:neurot...    27   8.8  

>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -3

Query: 168 SVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYAFIFLLYTLYALNVYFNKE 7
           ++N   A+FL   +K+ +S    +     S I+S AF+ +L+ +Y   +Y+NKE
Sbjct: 98  TINRFCAVFLPIAYKTLLSSTRTKVIIAFSFILSLAFLTILFQIYPCQMYYNKE 151


>DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 280 IKFIIISYFCGYIKFHIFFSFNS-KWILGW 366
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-coupled
           betaine transporterprotein protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 280 IKFIIISYFCGYIKFHIFFSFNS-KWILGW 366
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


>AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical
           protein W10G11.19 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 183 RFVKNSVNVVSALFLFNQHKSKISKKSDENTSCMSVIISYAFIFLLYTLY 34
           +FV NS    ++  +F QH  KI +    + S  S +I     F L T +
Sbjct: 43  KFVANSNRFWTSNLVFQQHNEKIDRVQISSESWKSAVIEEPVTFPLDTFF 92


>AF026211-1|AAB71293.2|  600|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 3
           protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 280 IKFIIISYFCGYIKFHIFFSFNS-KWILGW 366
           I F+ I+YFC  + + +F+  +S  W+  W
Sbjct: 118 IAFMCIAYFCVIVAWAMFYMISSIAWVFPW 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,938
Number of Sequences: 27780
Number of extensions: 266489
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)