Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1542
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 159 VVSALFLFNQHKSKISKKSDENTSCMSVIISYAFIFLLYTLYALNVYFNK 10
           V++  FL  + ++ + K          V +S+AFIF     +A+  YF K
Sbjct: 253 VLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQFAVVHYFTK 302


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 197 ALTMTKYVIVTQKIKFYK 250
           A+++ +Y+ VTQ IK+ K
Sbjct: 279 AISIDRYIAVTQPIKYAK 296


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 201 KALKCLRFVKNSVNVVSALFLFNQHKSKISKKSDENT 91
           + L+CLRF+   ++   A+   N+ K  I  K+  +T
Sbjct: 809 QGLECLRFLNEVISDFDAILDQNKFKDIIKIKTIGST 845


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,657
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)