Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1539
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   0.89 
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   4.8  
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    25   6.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.3  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   6.3  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.3  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -2

Query: 466 IVCVRLPLGALFQLHTKLA*LLRYRENVKKLALSTQNASDFVKIKKYNNCL 314
           I C RL    LF L ++   LLR  E ++ LA S +   DFVK++K N  +
Sbjct: 368 IECKRLRKENLF-LQSERTHLLRELEELRHLATSAKE--DFVKVEKLNKII 415


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 382 KKLALSTQNAS-DFVKIKKYNNCLLT 308
           K LALS  +++ D  KIKK ++CLL+
Sbjct: 106 KSLALSKSSSTFDLQKIKKIHDCLLS 131


>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 473 EWDRLRAFAARGAVPIAYKIGL 408
           +W++ +AF A+GA  + Y  G+
Sbjct: 125 DWNQTQAFVAKGAQGVTYSAGV 146


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 582 IGYRELRTCKLSVDIIVLSANFLNFFYSVKVSSYLYGMGSF 460
           + +  L    +  +   LS+   NFF+SV    ++YGM  F
Sbjct: 335 VAFEPLAPMDVLTERTCLSSYLCNFFHSVANFGWIYGMPLF 375


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 397 YRENVKKLALSTQNASDFVKIKKYNNCLLTYSLNSYC 287
           Y E    ++L  +  S  + + K+   LLT  L ++C
Sbjct: 15  YSETTNAISLKNERQSRDLSVNKHGRMLLTALLENFC 51


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 435 SAPSGKRTQTIPFHTNMS*LLRYR 506
           S PSG RT+ + +HT +  +L+ R
Sbjct: 7   SFPSGSRTKAVRYHTLLRPILQQR 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,307
Number of Sequences: 5004
Number of extensions: 33412
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)