Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1538
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    28   1.2  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   2.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   3.6  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   8.3  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.3  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 367 FLFHSSHDIPIVRSLTLTDSIRTKRILLILTNRYRYADA 483
           FL  +S  IP+V S  LTD I++ ++L   + +Y+  +A
Sbjct: 331 FLLATSLGIPLVSSQYLTDCIKSGKVLDFRSYKYKDEEA 369


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 22  NLKLQNIPKECRFQKFNTNTRNKLNYLDSTK 114
           NL+   +P   RF   + NT    NYL S K
Sbjct: 311 NLRQDGVPPILRFNSLSINTNVARNYLSSEK 341


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 22  NLKLQNIPKECRFQKFNTNTRNKLNYLDSTKNRKMCTLKIKHKKLLS 162
           N  LQ +P+E  FQ+F     +    ++    ++  +LK+K K++++
Sbjct: 442 NALLQMLPEEMAFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKKRIVT 488


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 58  FQKFNTNTRNKLNYLDSTKNRKMCTLKIK 144
           F+K N N +++++Y +S  N+K   L  K
Sbjct: 16  FEKVNENYKHEIDYHESILNKKTAVLAEK 44


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 49  ECRFQKFNTNTRNKLNYLDSTKNRKMCTLKIKHK--KLLSIYKH 174
           +C F    TN     NY  + K     ++KI+H    +L I+ H
Sbjct: 819 QCFFYVLQTNEMYLANYFQALKTEGTSSVKIRHAVYLVLQIFGH 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,159
Number of Sequences: 5004
Number of extensions: 42895
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)