Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1538
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732...    29   3.7  
08_02_0470 - 17551368-17552330,17552420-17552920                       28   4.9  
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    28   6.5  

>11_03_0177 +
           11269754-11270320,11271701-11272180,11272663-11273292,
           11273377-11273443,11273510-11273620,11273696-11275206
          Length = 1121

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 376 HSSHDIPIVRSLTLTDSIRTKRILLILTNRYRYADAHHIEQY 501
           H   D  +V  +  T+ IR  R ++ + ++YR++ + H+E +
Sbjct: 235 HVGDDGELVTEIVDTEYIRPARSIIRMDSKYRFSPSSHVEVF 276


>08_02_0470 - 17551368-17552330,17552420-17552920
          Length = 487

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 536 IEIYISISADTRYCSM*CASAYRYRFVNISNIRLVRIESVRVSERTIGISCDE 378
           IEI + +S    +          +R V +SNI L    + R+S+  + +SCDE
Sbjct: 301 IEILVGVSRAIEHLHSHAVPPVIHRDVKLSNILLDSSYAPRLSDFGLAVSCDE 353


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 536 IEIYISISADTRYCSM*CASAYRYRFVNISNIRLVRIESVRVSERTIGISCDE 378
           IEI + +S    Y       A  +  +  SNI L    S R+S   I +SCDE
Sbjct: 801 IEILLGVSRAIEYLHSYATPAVIHCDIKSSNILLDSSWSPRLSSFDIAVSCDE 853


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,140
Number of Sequences: 37544
Number of extensions: 216937
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)