Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1536
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    31   0.17 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    29   0.53 
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.7  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 239 HNITVLHNN-KTDIMCREGKHTALYYEEAVCTQPRLSVYVQP*TVNLVPSLAAR 81
           H IT++H N K+ +   E        E A C  P LS  +QP  V+L PS+ +R
Sbjct: 476 HLITLVHRNEKSSLPNLELYIDGSAVERAACPYPFLSSTLQPLYVSLGPSIGSR 529


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 KPISVFSSGTAACIQCEPKVIAATYHQVWMNSSTLNSELP-QCHDRF 481
           KP+  + S    C +  PK++A T+ +V     T++S+LP Q  DRF
Sbjct: 396 KPV-YYHSLLIECCRIAPKILAPTFGRVIRLMYTMSSDLPLQTLDRF 441


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 117 WLDIDGESGLGTHCFFIIQCCMFSFSAHNIGFIVM*NRNIMWFLHNY 257
           +L  DGES  G   + +    +F+ S HN+      N N++ +   Y
Sbjct: 323 YLSFDGESSWGLTTYSLASKYIFNTSHHNLTDQEFLNENMLDYFQRY 369


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 LHNTMLYVFLLGT*YRFYC 217
           +H  M+Y+ L+ T Y  YC
Sbjct: 193 IHTVMIYIILIVTCYTVYC 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,068
Number of Sequences: 5004
Number of extensions: 50582
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)