Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1536
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094735-1|AAM11088.1| 1171|Drosophila melanogaster GH27027p pro...    29   3.8  
AE014296-2131|AAS65014.1| 1171|Drosophila melanogaster CG4357-PB...    29   3.8  
AE014296-2130|AAF49927.1| 1171|Drosophila melanogaster CG4357-PA...    29   3.8  

>AY094735-1|AAM11088.1| 1171|Drosophila melanogaster GH27027p protein.
          Length = 1171

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -1

Query: 586  NKFKTLRRCVYFHEKGNARDIATVTANDDQISLVKKPIMALRKLRVQSRGVHPDLMVRGS 407
            N++  LR   Y  E+    D+  +T    + ++V  P+  +  L   SR + P L VRG+
Sbjct: 1106 NRYLRLRE--YLREQSTKSDLVVMTLPMPRKNIVSAPLY-MAWLESLSRDMPPFLFVRGN 1162

Query: 406  NDFRLTLYT 380
                LT Y+
Sbjct: 1163 QTSVLTFYS 1171


>AE014296-2131|AAS65014.1| 1171|Drosophila melanogaster CG4357-PB,
            isoform B protein.
          Length = 1171

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -1

Query: 586  NKFKTLRRCVYFHEKGNARDIATVTANDDQISLVKKPIMALRKLRVQSRGVHPDLMVRGS 407
            N++  LR   Y  E+    D+  +T    + ++V  P+  +  L   SR + P L VRG+
Sbjct: 1106 NRYLRLRE--YLREQSTKSDLVVMTLPMPRKNIVSAPLY-MAWLESLSRDMPPFLFVRGN 1162

Query: 406  NDFRLTLYT 380
                LT Y+
Sbjct: 1163 QTSVLTFYS 1171


>AE014296-2130|AAF49927.1| 1171|Drosophila melanogaster CG4357-PA,
            isoform A protein.
          Length = 1171

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -1

Query: 586  NKFKTLRRCVYFHEKGNARDIATVTANDDQISLVKKPIMALRKLRVQSRGVHPDLMVRGS 407
            N++  LR   Y  E+    D+  +T    + ++V  P+  +  L   SR + P L VRG+
Sbjct: 1106 NRYLRLRE--YLREQSTKSDLVVMTLPMPRKNIVSAPLY-MAWLESLSRDMPPFLFVRGN 1162

Query: 406  NDFRLTLYT 380
                LT Y+
Sbjct: 1163 QTSVLTFYS 1171


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,137,159
Number of Sequences: 53049
Number of extensions: 552026
Number of successful extensions: 1080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)