Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1536
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical ...    31   0.64 
L00665-1|AAA28148.1|  537|Caenorhabditis elegans protein ( Caeno...    28   4.5  

>AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical
           protein Y32B12B.5 protein.
          Length = 451

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = +3

Query: 270 VVTNVTLMDLTVNN*FLLVSHRCHKSQSQYFHLELLHVYSVSLKSLLPRTIRSG*TPLL* 449
           VV   T++  ++N  F + S +CH S ++   L    + ++S ++LLP  +      LL 
Sbjct: 334 VVCFTTILFCSLNIYFFMTSIQCHMS-TRTLELNRQLLVTLSFQTLLPFVMMHSPVGLLF 392

Query: 450 TLSFRSAMIGFFTSEI*SSLAVTVAM 527
            L      +G+  + + +SLA+  A+
Sbjct: 393 CLPLVEVYVGYIANYVGASLALYPAL 418


>L00665-1|AAA28148.1|  537|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc4, complete
           cds. ).
          Length = 537

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 148 PSPDSPSMSNHRQSI*FHL*PLGAASKYKGSAAIFDLHSLHQEE 17
           P P +PS+S H Q +  HL  +     Y G  ++ +   L QEE
Sbjct: 19  PLPSNPSISRHEQKVADHLASI-IKESYYGDTSVEESEYLVQEE 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,495
Number of Sequences: 27780
Number of extensions: 289474
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)