Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1536
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.58 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 335 MPQKPISVFSSGTAACIQCEPKVIAATYHQVWMNSSTLN 451
           MP     VF+SGT  C+          Y   W     LN
Sbjct: 134 MPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILN 172


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 326 IASMPQKPISVFSSGTAACIQCEPKVIAATYHQVWMNSSTLNSELPQCHDRFF 484
           I  +P   ++++S   + CI  E  V AA     W+NS  +N  +  C  R F
Sbjct: 346 ICWLPFFVVNLWSGFCSQCIWQEKIVFAAVTWLGWINSG-MNPVIYACWSRDF 397


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 97  GTKLTVYGWT*TESLGWVHTASS*YNAVCFPSRHIISVLLL 219
           G++  +  W     L W   ASS       PS+  +SV LL
Sbjct: 672 GSQCFINIWLLGSRLDWEDHASSPLEPSAVPSKFCLSVTLL 712


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 187  ENIQHCIMKKQCVPSP 140
            E + HC   ++C P P
Sbjct: 1690 EELNHCAPNRRCPPPP 1705



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 359 FSSGTAACIQCEPK 400
           FS+GT A ++C+ +
Sbjct: 15  FSNGTGAVVECQAR 28


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 153 HCFFIIQCCMF 185
           HCF +  CC F
Sbjct: 742 HCFALCHCCDF 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,363
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)