Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1533
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.2  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   6.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.0  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +2

Query: 404  IGDFDPMIDSSKHCSYKNRCSFRPSPVSSLHNQDEAQI 517
            + +FDP  ++ +H SY+ R   +       H +++ Q+
Sbjct: 1065 VNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQEQL 1102


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 267 LDPFYNKEVYYKKKNFYLTFRVETYKIRIQRTFARK 374
           L P+ ++ V  KKK FY+   +   K++++ T+  +
Sbjct: 315 LIPWSSQTVMVKKKQFYIPAIIAKDKLKLRSTYVNQ 350


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 267 LDPFYNKEVYYKKKNFYLTFRVETY 341
           +D   N EV+ K+ NFY T  V  Y
Sbjct: 881 IDSNNNPEVFLKENNFYDTLTVGKY 905


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 66   NTSQIAYQFYCRIVYKYFYELH 1
            N   I YQF+ R+ Y   YEL+
Sbjct: 1092 NCKAIVYQFFFRVPYTDTYELN 1113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,645
Number of Sequences: 5004
Number of extensions: 43581
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)