Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1533
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034     28   5.2  
04_04_1321 + 32634471-32634566,32635102-32635193,32635290-326355...    27   9.1  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    27   9.1  

>02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034
          Length = 178

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 422 MIDSSKHCSYKNRCSFRPSPVSSLHNQD 505
           +ID SK   YK +C F P+    LH  D
Sbjct: 116 IIDKSKPHGYKTKCEFCPASYGILHPGD 143


>04_04_1321 +
           32634471-32634566,32635102-32635193,32635290-32635585,
           32635665-32635863,32636019-32636223,32637001-32637093
          Length = 326

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 506 RPDCGASSQGWA*KNICSCRSSASTNLSSDRNRRCFG 396
           +P CG + Q W    +  C +SA T+   D   +  G
Sbjct: 54  KPKCGTNPQSWKVLRVQKCHTSAQTDGKVDETDQING 90


>01_07_0084 +
           40976976-40977164,40978174-40978201,40978445-40978575,
           40978941-40979434,40979516-40979609,40979686-40979779,
           40980342-40980444,40980550-40980601,40980716-40980756,
           40980881-40980960,40981490-40981936,40982378-40982554,
           40983205-40983803,40983886-40985040
          Length = 1227

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 505 VLIVERAHRAGPKRTSVLVGAVLRRIYHRIEIADVSARNLLSYVLRANVR 356
           VL+    H+A P   S ++  + R  ++R +     ARNLLS + +  VR
Sbjct: 313 VLLHLPLHKALPAHMSTVLQTINRLRFYRTQDISSKARNLLSRLSKVLVR 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,412
Number of Sequences: 37544
Number of extensions: 232740
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)