Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1533
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical...    29   1.5  
U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical
           protein ZK973.1 protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 267 LDPFYNKEVYYKKKNFY---LTFRVETYKI-RIQRTFA 368
           + PF  K VY+  KNFY   L + ++ Y I RI+R  A
Sbjct: 270 IHPFSRKSVYFGMKNFYQEALAYSIKNYFIPRIERKMA 307


>U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical
           protein C02G6.3 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 317 IKVFFF--IIYLFIIKRIQFLRHKIFFTGIIFH 225
           + +FFF  I  LFI ++IQ +RHK      ++H
Sbjct: 90  LMIFFFGCISILFIFRKIQHIRHKEHEPDFVYH 122


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 455 SCRSSASTNLSSDRNRRCFGEKLIK 381
           SC    ST L  DR ++C G+K +K
Sbjct: 180 SCNGEGSTFLEKDRCKKCNGKKQVK 204


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 413 NRRCFGEKLIKLCFACKCTLNSNFICFNAKS*IKVFFF 300
           NRRC  ++L+ L  A   +++S F+ F   S + +FFF
Sbjct: 323 NRRCSSDRLLALGPAISASVSSLFMVFCFCSALLLFFF 360


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 401 NIGDFDPM-IDSSKHCSYKNRCSFRPS 478
           N   F P  +DSS H SY N   FRPS
Sbjct: 788 NNSPFKPSNLDSSVHRSYNNNSPFRPS 814


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,438
Number of Sequences: 27780
Number of extensions: 239939
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)