Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1532
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   3.6  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.4  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 304 EYSDCRSNIILLLSFF*DKYYPNNLS 381
           EY++C SN  ++ + F   YY  NLS
Sbjct: 37  EYAECMSNAPIVFNRFDASYYTRNLS 62


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 86  YHSNKITDESHINLDKSQKYNYATPIGHGCSLDPNLIREHF 208
           YH++   D+    L      NY   +G  C  D +LIRE+F
Sbjct: 135 YHTS---DDKFDKLGLDDSLNYPYVLGPTCDSDIDLIREYF 172


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 422 INKRSKNLYKMSTRGGARYPIRPIVSRITIHWAVVLQPS*L--GKPLAL 562
           I +  KN+ KMS R     P  P +S+I+     V  P  L   KP+++
Sbjct: 548 ITRPFKNVNKMSVRKALIKPFHPPISKISRTRLTVSSPERLYCAKPISM 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,124
Number of Sequences: 5004
Number of extensions: 48967
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)